Efficient Alignment Free Sequence Comparison with Bounded Mismatches

2015 ◽  
pp. 1-12 ◽  
Author(s):  
Srinivas Aluru ◽  
Alberto Apostolico ◽  
Sharma V. Thankachan
Keyword(s):  
Sequence Comparison ◽  
Alignment Free

Extraction of high quality k-words for alignment-free sequence comparison

2014 ◽  
Vol 358 ◽  
pp. 31-51 ◽  
Author(s):  
Upuli Gunasinghe ◽  
Damminda Alahakoon ◽  
Susan Bedingfield
Keyword(s):  
Sequence Comparison ◽  
High Quality ◽  
Alignment Free

scholarly journals Benchmarking of alignment-free sequence comparison methods

2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Andrzej Zielezinski ◽  
Hani Z. Girgis ◽  
Guillaume Bernard ◽  
Chris-Andre Leimeister ◽  
Kujin Tang ◽  
...  
Keyword(s):  
Sequence Comparison ◽  
Alignment Free ◽  
Comparison Methods

Statistical considerations underpinning an alignment-free sequence comparison method

2010 ◽  
Vol 39 (3) ◽  
pp. 325-335
Author(s):  
Junmei Jing ◽  
Conrad J. Burden ◽  
Sylvain Forêt ◽  
Susan R. Wilson
Keyword(s):  
Sequence Comparison ◽  
Comparison Method ◽  
Alignment Free

scholarly journals A Geometric Interpretation for Local Alignment-Free Sequence Comparison

2013 ◽  
Vol 20 (7) ◽  
pp. 471-485 ◽  
Author(s):  
Ehsan Behnam ◽  
Michael S. Waterman ◽  
Andrew D. Smith
Keyword(s):  
Sequence Comparison ◽  
Geometric Interpretation ◽  
Local Alignment ◽  
Alignment Free

scholarly journals Alignment-Free Sequence Comparison (I): Statistics and Power

2009 ◽  
Vol 16 (12) ◽  
pp. 1615-1634 ◽  
Author(s):  
Gesine Reinert ◽  
David Chew ◽  
Fengzhu Sun ◽  
Michael S. Waterman
Keyword(s):  
Sequence Comparison ◽  
Alignment Free
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