Human-in-the-Loop Layout and Geometry Optimization of Structures and Components

Author(s):  
Linwei He ◽  
Matthew Gilbert ◽  
Thomas Johnson ◽  
Chris Smith
2021 ◽  
Author(s):  
Yifan Wang ◽  
Tai-Ying Chen ◽  
Dionisios Vlachos

<div> <div> <div> <p>Automation and optimization of chemical systems require well-inform decisions on what experiments to run to reduce time, materials, and/or computations. Data-driven active learning algorithms have emerged as valuable tools to solve such tasks. Bayesian optimization, a sequential global optimization approach, is a popular active-learning framework. Past studies have demonstrated its efficiency in solving chemistry and engineering problems. We introduce NEXTorch, a library in Python/PyTorch, to facilitate laboratory or computational design using Bayesian optimization. NEXTorch offers fast predictive modeling, flexible optimization loops, visualization capabilities, easy interfacing with legacy software, and multiple types of parameters and data type conversions. It provides GPU acceleration, parallelization, and state-of-the-art Bayesian Optimization algorithms and supports both automated and human-in-the-loop optimization. The comprehensive online documentation introduces Bayesian optimization theory and several examples from catalyst synthesis, reaction condition optimization, parameter estimation, and reactor geometry optimization. NEXTorch is open-source and available on GitHub. </p> </div> </div> </div>


2021 ◽  
Author(s):  
Yifan Wang ◽  
Tai-Ying Chen ◽  
Dionisios Vlachos

<div> <div> <div> <p>Automation and optimization of chemical systems require well-inform decisions on what experiments to run to reduce time, materials, and/or computations. Data-driven active learning algorithms have emerged as valuable tools to solve such tasks. Bayesian optimization, a sequential global optimization approach, is a popular active-learning framework. Past studies have demonstrated its efficiency in solving chemistry and engineering problems. We introduce NEXTorch, a library in Python/PyTorch, to facilitate laboratory or computational design using Bayesian optimization. NEXTorch offers fast predictive modeling, flexible optimization loops, visualization capabilities, easy interfacing with legacy software, and multiple types of parameters and data type conversions. It provides GPU acceleration, parallelization, and state-of-the-art Bayesian Optimization algorithms and supports both automated and human-in-the-loop optimization. The comprehensive online documentation introduces Bayesian optimization theory and several examples from catalyst synthesis, reaction condition optimization, parameter estimation, and reactor geometry optimization. NEXTorch is open-source and available on GitHub. </p> </div> </div> </div>


2019 ◽  
Vol 29 (7) ◽  
pp. 605-628
Author(s):  
Zongli Yi ◽  
Li Hou ◽  
Qi Zhang ◽  
Yousheng Wang ◽  
Yunxia You

2014 ◽  
Vol 22 (2) ◽  
pp. 179-193
Author(s):  
Nancy Bienert ◽  
Joey Mercer ◽  
Jeffrey R. Homola ◽  
Susan E. Morey ◽  
Thomas Prevot

2020 ◽  
Author(s):  
Pierpaolo Morgante ◽  
Roberto Peverati

<div><div><div><p>In this Letter, we introduce a new database called carbon long bond 18 (CLB18), composed of 18 structures with one long C–C bond. We use this new database to evaluate the performance of several low-cost methods commonly used for geometry optimization of medium and large molecules. We found that the long bonds in CLB18 are electronically different from those found in barrier heights databases. We also report the unexpected correlation between the results of CLB18 and those of the energetics of spin states in transition-metal complexes. Given this unique property, CLB18 can be a useful tool for assessing existing electronic structure calculation methods and developing new ones.</p></div></div></div>


2019 ◽  
Author(s):  
Siddhartha Laghuvarapu ◽  
Yashaswi Pathak ◽  
U. Deva Priyakumar

Recent advances in artificial intelligence along with development of large datasets of energies calculated using quantum mechanical (QM)/density functional theory (DFT) methods have enabled prediction of accurate molecular energies at reasonably low computational cost. However, machine learning models that have been reported so far requires the atomic positions obtained from geometry optimizations using high level QM/DFT methods as input in order to predict the energies, and do not allow for geometry optimization. In this paper, a transferable and molecule-size independent machine learning model (BAND NN) based on a chemically intuitive representation inspired by molecular mechanics force fields is presented. The model predicts the atomization energies of equilibrium and non-equilibrium structures as sum of energy contributions from bonds (B), angles (A), nonbonds (N) and dihedrals (D) at remarkable accuracy. The robustness of the proposed model is further validated by calculations that span over the conformational, configurational and reaction space. The transferability of this model on systems larger than the ones in the dataset is demonstrated by performing calculations on select large molecules. Importantly, employing the BAND NN model, it is possible to perform geometry optimizations starting from non-equilibrium structures along with predicting their energies.


2020 ◽  
Author(s):  
Ali Al-Yacoubb ◽  
Will Eaton ◽  
Melanie Zimmer ◽  
Achim Buerkle ◽  
Dedy Ariansyaha ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document