Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16

1992 ◽  
Vol 232 (2) ◽  
pp. 206-214 ◽  
Author(s):  
Junko Tsudzuki ◽  
Keiko Nakashima ◽  
Takahiko Tsudzuki ◽  
Junzou Hiratsuka ◽  
Masaru Shibata ◽  
...  
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Nucleotide Sequences ◽  
Rrna Genes ◽  
Black Pine

scholarly journals Mapping of rRNA genes in an inverted repeat in Nicotiana tabacum chloroplast DNA

1980 ◽  
Vol 8 (16) ◽  
pp. 3505-3516 ◽  
Author(s):  
James E. Jurgenson ◽  
Don P. Bourque
Keyword(s):  
Nicotiana Tabacum ◽  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Rrna Genes

The site of deletion of the inverted repeat in pea chloroplast DNA contains duplicated gene fragments

1988 ◽  
Vol 13 (1) ◽  
pp. 97-99 ◽  
Author(s):  
Kenneth H. Wolfe
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat

Molecular Phylogeny of Dipetrocarpaceae in Southeast Asia Based on Nucleotide Sequences ofmatK,trnL Intron, andtrnL-trnF Intergenic Spacer Region in Chloroplast DNA

1998 ◽  
Vol 10 (2) ◽  
pp. 202-209 ◽  
Author(s):  
Tadashi Kajita ◽  
Koichi Kamiya ◽  
Kaho Nakamura ◽  
Hidenori Tachida ◽  
Ratnam Wickneswari ◽  
...  
Keyword(s):  
Molecular Phylogeny ◽  
Southeast Asia ◽  
Chloroplast Dna ◽  
Intergenic Spacer ◽  
Nucleotide Sequences ◽  
Trnl Intron ◽  
Intergenic Spacer Region

scholarly journals Complete Chloroplast Genome of Paphiopedilum delenatii and Phylogenetic Relationships among Orchidaceae

Plants ◽  
2020 ◽  
Vol 9 (1) ◽  
pp. 61 ◽  
Author(s):  
Huyen-Trang Vu ◽  
Ngan Tran ◽  
Thanh-Diem Nguyen ◽  
Quoc-Luan Vu ◽  
My-Huyen Bui ◽  
...  
Keyword(s):  
Chloroplast Genome ◽  
Inverted Repeat ◽  
Gc Content ◽  
Single Copy ◽  
Rrna Genes ◽  
Trna Genes ◽  
Complete Chloroplast Genome ◽  
Critically Endangered Species ◽  
Plastid Genomes ◽  
Chloroplast Genomes

Paphiopedilum delenatii is a native orchid of Vietnam with highly attractive floral traits. Unfortunately, it is now listed as a critically endangered species with a few hundred individuals remaining in nature. In this study, we performed next-generation sequencing of P. delenatii and assembled its complete chloroplast genome. The whole chloroplast genome of P. delenatii was 160,955 bp in size, 35.6% of which was GC content, and exhibited typical quadripartite structure of plastid genomes with four distinct regions, including the large and small single-copy regions and a pair of inverted repeat regions. There were, in total, 130 genes annotated in the genome: 77 coding genes, 39 tRNA genes, 8 rRNA genes, and 6 pseudogenes. The loss of ndh genes and variation in inverted repeat (IR) boundaries as well as data of simple sequence repeats (SSRs) and divergent hotspots provided useful information for identification applications and phylogenetic studies of Paphiopedilum species. Whole chloroplast genomes could be used as an effective super barcode for species identification or for developing other identification markers, which subsequently serves the conservation of Paphiopedilum species.

The chloroplast genome of Pinussylvestris; physical map and localization of chloroplast genes

1993 ◽  
Vol 23 (2) ◽  
pp. 234-238 ◽  
Author(s):  
B. Karpinska ◽  
S. Karpinski
Keyword(s):  
16S Rrna ◽  
Chloroplast Dna ◽  
Gene Order ◽  
Restriction Site ◽  
Physical Map ◽  
Genetic Maps ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Chloroplast Genes ◽  
Restriction Fragments

A physical map of Pinussylvestris L. chloroplast DNA for three restriction endonucleases (PstI, SacI, and KpnI) has been prepared by hybridization of isolated or cloned restriction fragments. Pinussylvestris chloroplast DNA is about 120 kilobases. Ten chloroplast genes have been localized by hybridization with heterologous chloroplast DNA probes. The genome contains single copies of the 23S and 16S rRNA genes and lacks any large repeated sequences. The restriction site arrangement and gene order have been compared with other known chloroplast DNA genetic maps of pine species.

NUCLEOTIDE SEQUENCES OF SMALL-SUBUNIT AND INTERNAL TRANSCRIBED SPACER REGIONS OF NUCLEAR rRNA GENES SUPPORT THE AUTONOMY OF SOME GENERA OF THE GELIDIALES (RHODOPHYTA)

1998 ◽  
Vol 34 (2) ◽  
pp. 299-305 ◽  
Author(s):  
Mohsin U. Patwary ◽  
Christoph W. Sensen ◽  
Ron M. MacKay ◽  
John P. van der Meer
Keyword(s):  
Internal Transcribed Spacer ◽  
Small Subunit ◽  
Nucleotide Sequences ◽  
Rrna Genes ◽  
Internal Transcribed Spacer Regions

Genetic Relationships between Desmothoracid Heliozoa and Gymnophryid Amoebas as Evidenced by Comparison of the Nucleotide Sequences of 18S rRNA Genes

2003 ◽  
Vol 393 (1-6) ◽  
pp. 553-556 ◽  
Author(s):  
S. I. Nikolaev ◽  
S. Berney ◽  
J. Fahrni ◽  
A. P. Mylnikov ◽  
N. B. Petrov ◽  
...  
Keyword(s):  
18S Rrna ◽  
Genetic Relationships ◽  
Nucleotide Sequences ◽  
Rrna Genes ◽  
18S Rrna Genes

scholarly journals Chloroplast DNA evolution among legumes: Loss of a large inverted repeat occurred prior to other sequence rearrangements

1987 ◽  
Vol 11 (4) ◽  
pp. 275-286 ◽  
Author(s):  
Jeffrey D. Palmer ◽  
Bernardita Osorio ◽  
Jane Aldrich ◽  
William F. Thompson
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Dna Evolution ◽  
Chloroplast Dna Evolution

scholarly journals Organization of Achlya mtDNA: a population with two orientations and a large inverted repeat containing the rRNA genes.

1983 ◽  
Vol 80 (1) ◽  
pp. 142-146 ◽  
Author(s):  
M. E. Hudspeth ◽  
D. S. Shumard ◽  
C. J. Bradford ◽  
L. I. Grossman
Keyword(s):  
Inverted Repeat ◽  
Rrna Genes
Sign in / Sign up

Export Citation Format

Share Document