The site of deletion of the inverted repeat in pea chloroplast DNA contains duplicated gene fragments

1988 ◽  
Vol 13 (1) ◽  
pp. 97-99 ◽  
Author(s):  
Kenneth H. Wolfe
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat

scholarly journals Chloroplast DNA evolution among legumes: Loss of a large inverted repeat occurred prior to other sequence rearrangements

1987 ◽  
Vol 11 (4) ◽  
pp. 275-286 ◽  
Author(s):  
Jeffrey D. Palmer ◽  
Bernardita Osorio ◽  
Jane Aldrich ◽  
William F. Thompson
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Dna Evolution ◽  
Chloroplast Dna Evolution

Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost

Cell ◽  
1982 ◽  
Vol 29 (2) ◽  
pp. 537-550 ◽  
Author(s):  
Jeffrey D. Palmer ◽  
William F. Thompson
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Repeat Sequence ◽  
Inverted Repeat Sequence ◽  
Dna Rearrangements

scholarly journals Mapping of rRNA genes in an inverted repeat in Nicotiana tabacum chloroplast DNA

1980 ◽  
Vol 8 (16) ◽  
pp. 3505-3516 ◽  
Author(s):  
James E. Jurgenson ◽  
Don P. Bourque
Keyword(s):  
Nicotiana Tabacum ◽  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Rrna Genes

Plastome Mutator–Induced Alterations Arise in Oenothera Chloroplast DNA Through Template Slippage

Genetics ◽  
1998 ◽  
Vol 149 (1) ◽  
pp. 347-353 ◽  
Author(s):  
Lara L Stoike ◽  
Barbara B Sears
Keyword(s):  
Secondary Structure ◽  
Homologous Recombination ◽  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Plastid Genome ◽  
Direct Repeats ◽  
Recombination Mechanism ◽  
Plastome Mutator ◽  
Target Sites ◽  
The One

Abstract The plastome mutator of Oenothera hookeri strain Johansen causes deletions and duplications at target sites defined by direct repeats in the plastid genome. Previous studies characterized the mutations long after they had occurred and could not discriminate between the possibilities that the plastome mutator acted through unequal homologous recombination or template slippage. From the known hotspots, the rRNA spacer in the large inverted repeat was chosen for this study because it contains both direct and indirect repeats. Identical deletions were recovered from independently derived plants; the altered regions were always flanked by direct repeats. The regions in which the deletions occurred have the potential to form secondary structures that would stabilize the intervening sequence. Of the two affected regions, the one with the stronger potential secondary structure was altered more frequently. Because no duplication products or inversions were recovered, it is proposed that the plastome mutator acts through template slippage rather than through a recombination mechanism.

Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16

1992 ◽  
Vol 232 (2) ◽  
pp. 206-214 ◽  
Author(s):  
Junko Tsudzuki ◽  
Keiko Nakashima ◽  
Takahiko Tsudzuki ◽  
Junzou Hiratsuka ◽  
Masaru Shibata ◽  
...  
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Nucleotide Sequences ◽  
Rrna Genes ◽  
Black Pine

A Chloroplast DNA Phylogeny of the Caryophyllales Based on Structural and Inverted Repeat Restriction Site Variation

1994 ◽  
Vol 19 (2) ◽  
pp. 236 ◽  
Author(s):  
Stephen R. Downie ◽  
Jeffrey D. Palmer
Keyword(s):  
Chloroplast Dna ◽  
Inverted Repeat ◽  
Restriction Site ◽  
Dna Phylogeny ◽  
Restriction Site Variation ◽  
Site Variation
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