k-nearest neighbor molecular field analysis based 3D-QSAR and in silico ADME/T studies of cinnamoyl derivatives as HIV-1 integrase inhibitors

2014 ◽  
Vol 24 (2) ◽  
pp. 684-700 ◽  
Author(s):  
V. K. Srivastav ◽  
M. Tiwari
INDIAN DRUGS ◽  
2021 ◽  
Vol 58 (11) ◽  
pp. 18-28
Author(s):  
Tanvi V. Wani ◽  
◽  
Mrunmayee P. Toraskar

Carbonic anhydrase II is one of the forms of human α carbonic anhydrases which are ubiquitous metalloenzymes that catalyze inter-conversion of carbon dioxide and water to bicarbonate and proton, overexpression of which leads to disorders such as glaucoma. 2D and 3D Quantitative Structure Activity Relationship studies were carried out on previously synthesized series of sulfanilamide derivatives by VLife MDS software using stepwise variable, multi-linear regression and k-nearest neighbor molecular field analysis methods. 2D-QSAR model depicts contribution of halogens (such as chlorine and fluorine), methylene and oxygen atoms to inhibition of human carbonic anhydrases II activity. Using k-nearest neighbor molecular field analysis method two 3D-QSAR models (model A and B) were generated from which model A was found to be the best validated model with q2 (0.9494), pred_r2 (0.7367) and q2 _ se (0.2037). It displayed the fact that the inhibitory action of sulfanilamide derivatives against human carbonic anhydrases II is influenced by hydrophobicity and electro positivity.


INDIAN DRUGS ◽  
2018 ◽  
Vol 55 (05) ◽  
pp. 7-13
Author(s):  
M. C Sharma ◽  

Quantitative Structure-Activity Relationship studies were performed for correlating the imidazolyl derivatives and their activity using molecular modeling studies. The statistically significant best 2D model was having correlation coefficient = 0.8221 and cross-validated squared correlation coefficient = 0.7534 with external predictive ability of pred_r2 = 0.7716. Molecular field analysis was used to construct the best 3D-QSAR model showing good correlative and predictive capabilities in terms of q2 =0.6781 and pred_r2 =0.7299. The molecular field analysis (MFA) contour plots provided further understanding of the relationship between structural features of Imidazolyl derivatives and their activities which should be applicable to design newer potential antihypertensive agents.


2008 ◽  
Vol 341 (6) ◽  
pp. 357-364 ◽  
Author(s):  
Patcharawee Nunthanavanit ◽  
Nahoum G. Anthony ◽  
Blair F. Johnston ◽  
Simon P. Mackay ◽  
Jiraporn Ungwitayatorn

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