Bacterial community along a historic lake sediment core of Ardley Island, west Antarctica

Extremophiles ◽  
2006 ◽  
Vol 10 (5) ◽  
pp. 461-467 ◽  
Author(s):  
Shengkang Li ◽  
Xiang Xiao ◽  
Xuebin Yin ◽  
Fengping Wang
Author(s):  
Jiawei Fan ◽  
Hanchao Jiang ◽  
Wei Shi ◽  
Qiaoqiao Guo ◽  
Siqi Zhang ◽  
...  

2006 ◽  
Vol 35 (1) ◽  
pp. 99-109 ◽  
Author(s):  
M. Catherine Eimers ◽  
Andrew M. Paterson ◽  
Peter J. Dillon ◽  
Sherry L. Schiff ◽  
Brian F. Cumming ◽  
...  

2005 ◽  
Vol 71 (12) ◽  
pp. 7904-7909 ◽  
Author(s):  
Xiang Xiao ◽  
Xuebin Yin ◽  
Jian Lin ◽  
Liguang Sun ◽  
Ziyong You ◽  
...  

ABSTRACT A sediment core spanning approximately 1,600 years was collected from a lake on Ardley Island, Antarctica. The sediment core had been greatly influenced by penguin guano. Using molecular methods, the chitinolytic bacterial community along the sediment core was studied over its entire length. Primers targeting conserved sequences of the catalytic domains of family 18 subgroup A chitinases detected group A chitinases from a wide taxonomic range of bacteria. Using quantitative competitive PCR (QC-PCR), chitinase gene copies in each 1-cm section of the whole sediment column were quantified. QC-PCR determination of the chitinase gene copies indicated significant correlation with phosphorus and total organic carbon concentration, suggesting a historical connection between chitinase gene copies and the amount of penguin guano input into the lake sediment. Most of the chitinase genes cloned from the historic sediment core were novel. Analysis of the chitinase gene diversity in selected sediment layers and in the fresh penguin deposits indicated frequent shifts in the chitinolytic bacterial community over time. Sequence analysis of the 16S rRNA genes of chitinolytic bacteria isolated from the lake sediment revealed that the isolates belonged to Janthinobacterium species, Stenotrophomonas species of γ-Proteobacteria, Cytophaga species of the Cytophaga-Flexibacter-Bacteroides group, and Streptomyces and Norcardiopsis species of Actinobacteria. Chitinase gene fragments were cloned and sequenced from these cultivated chitinolytic bacteria. The phylogeny of the chitinase genes obtained from the isolates did not correspond well to that of the isolates, suggesting acquisition via horizontal gene transfer.


2016 ◽  
Author(s):  
Seth J. Getch ◽  
◽  
Kyle G. Hansen ◽  
Michael L. Griffiths ◽  
Stefanie A. Brachfeld ◽  
...  

2017 ◽  
Vol 586 ◽  
pp. 685-695 ◽  
Author(s):  
Johan A. Wiklund ◽  
Jane L. Kirk ◽  
Derek C.G. Muir ◽  
Marlene Evans ◽  
Fan Yang ◽  
...  

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