EST–SSR markers for asparagus genetic diversity evaluation and cultivar identification

2007 ◽  
Vol 21 (2) ◽  
pp. 195-204 ◽  
Author(s):  
Marco Caruso ◽  
Claire T. Federici ◽  
Mikeal L. Roose
2009 ◽  
Vol 134 (5) ◽  
pp. 535-542 ◽  
Author(s):  
Àngel Fernández i Martí ◽  
José M. Alonso ◽  
María T. Espiau ◽  
María J. Rubio-Cabetas ◽  
Rafel Socias i Company

Genetic diversity of the Spanish national almond (Prunus amygdalus Batsch) collection was characterized with 19 simple sequence repeat (SSR) markers selected because of their polymorphism in almond and other Prunus L. species. A total of 93 almond genotypes, including 63 Spanish cultivars from different growing regions, as well as some international cultivars and breeding releases were analyzed. All primers produced a successful amplification, giving a total of 323 fragments in the genotypes studied, with an average of 17 alleles per SSR, ranging from 4 (EPDCU5100) to 33 (BPPCT038). Allele size ranged from 88 bp at locus PMS40 to 260 bp at locus CPPCT022. The heterozygosity observed (0.72) was much higher not only than in other Prunus species, but also than in other almond pools already studied. The dendrogram generated using the variability observed classified most of the genotypes according to their geographical origin, confirming the particular evolution of different almond ecotypes. The SSR markers have consequently shown their usefulness for cultivar identification in almond, for establishing the genetic closeness among its cultivars, and for establishing genealogical relationships.


2010 ◽  
Vol 29 (3) ◽  
pp. 554-562 ◽  
Author(s):  
Rang-Jin Xie ◽  
Jian Zhou ◽  
Guo-Yun Wang ◽  
Shui-Ming Zhang ◽  
Lin Chen ◽  
...  

2004 ◽  
Vol 129 (3) ◽  
pp. 374-382 ◽  
Author(s):  
Yiqi Zhen ◽  
Zuozhou Li ◽  
Hongwen Huang ◽  
Ying Wang

Forty-eight kiwifruit cultivars and selections, representing more than 90% of total world kiwifruit production, were investigated using nine SSR markers to establish genetic identities, and evaluate genetic diversity and relatedness. These nine SSRs were polymorphic and a total of 213 alleles were detected, resulting in a mean number of 23.7 alleles per locus, ranging from nine to 38 alleles. One hundred and thirty-three alleles were found to be common to both A. chinensis and A. deliciosa, while 33 and 36 were specific to A. chinensis and A. deliciosa, respectively. In addition, 34 alleles were specific to one single genotype and provided a set of valuable alleles for cultivar identification. A single SSR locus UDK 96-414 could differentiate all 48 genotypes except two presumable clones. Mean number of alleles per locus (A), percentage of polymorphic loci (P), and direct count heterozygosity (Ho) assessed for each genotype over all loci revealed considerable differences among these 48 genotypes. On average, A = 2.6, P = 89.4% and Ho = 0.546 were found in A. chinensis cultivars, while A = 3.5, P = 97.0% and Ho = 0.671 in A. deliciosa cultivars. Consensus fingerprint profiling using SSR markers is a useful and reliable method for establishing genetic identities of kiwifruit cultivars and selections. It also improves evaluation effectiveness of genetic diversity and relatedness compared to RAPD markers.


2020 ◽  
Vol 47 (4) ◽  
pp. 2447-2457 ◽  
Author(s):  
Himanshu Sharma ◽  
Pankaj Kumar ◽  
Abhishek Singh ◽  
Kanika Aggarwal ◽  
Joy Roy ◽  
...  

2012 ◽  
pp. 29-35
Author(s):  
S. Currò ◽  
M. Caruso ◽  
G. Las Casas ◽  
S. La Malfa ◽  
A. Gentile

2021 ◽  
Author(s):  
Xiaxia Li ◽  
Lijun Qiao ◽  
Birong Chen ◽  
Yujie Zheng ◽  
Chengchen Zhi ◽  
...  

2020 ◽  
Vol 52 (6) ◽  
Author(s):  
Anpei Zhou ◽  
Dan Zong ◽  
Peihua Gan ◽  
Yao Zhang ◽  
Dan Li ◽  
...  

2009 ◽  
Vol 17 (5) ◽  
pp. 482 ◽  
Author(s):  
Dai Li-chuan ◽  
Zhang Ming-long ◽  
Liu Ji-ye ◽  
Li Xiao-bai ◽  
Cui Hai-rui

2011 ◽  
Vol 19 (1) ◽  
pp. 17-23 ◽  
Author(s):  
Wang Lixia ◽  
Cheng Xuzhen ◽  
Wang Suhua

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