A molecular dynamics study of the C-terminal fragment of the ribosomal protein

Low-Frequency Domain Motions in the Carboxy Terminal Fragment of L7/L12 Ribosomal Protein Studied with Molecular Dynamics Techniques: Are These Movements Model Independent?

The Journal of Physical Chemistry ◽

10.1021/j100015a062 ◽

1995 ◽

Vol 99 (15) ◽

pp. 5698-5704 ◽

Cited By ~ 4

Author(s):

Yves-Henri Sanejouand ◽

Orlando Tapia

Keyword(s):

Molecular Dynamics ◽

Ribosomal Protein ◽

Frequency Domain ◽

Low Frequency ◽

Terminal Fragment ◽

Model Independent ◽

Domain Motions ◽

Carboxy Terminal

A molecular dynamics study of the C-terminal fragment of the L7/L12 ribosomal protein

European Biophysics Journal ◽

10.1007/bf00257881 ◽

1989 ◽

Vol 16 (6) ◽

Cited By ~ 9

Author(s):

J. �qvist ◽

M. Leijonmarck ◽

O. Tapia

Keyword(s):

Molecular Dynamics ◽

Ribosomal Protein ◽

A molecular dynamics simulation of the C-terminal fragment of the L7/L12 ribosomal protein in solution

Chemical Physics ◽

10.1016/0301-0104(91)87085-a ◽

1991 ◽

Vol 158 (2-3) ◽

pp. 501-512 ◽

Cited By ~ 14

Author(s):

Valerie Daggett ◽

Michael Levitt

Keyword(s):

Molecular Dynamics ◽

Ribosomal Protein ◽

Dynamics Simulation ◽

Molecular dynamics simulation of the solution structure of the C-terminal fragment of L7/L12 ribosomal protein

Biopolymers ◽

10.1002/bip.360300120 ◽

1990 ◽

Vol 30 (1-2) ◽

pp. 205-209 ◽

Cited By ~ 16

Author(s):

Johan Åqvist ◽

Orlando Tapia

Keyword(s):

Molecular Dynamics ◽

Ribosomal Protein ◽

Solution Structure ◽

Dynamics Simulation ◽

Structure of a Two-Domain N-Terminal Fragment of Ribosomal Protein L10 from Methanococcus jannaschii Reveals a Specific Piece of the Archaeal Ribosomal Stalk

Journal of Molecular Biology ◽

10.1016/j.jmb.2010.04.017 ◽

2010 ◽

Vol 399 (2) ◽

pp. 214-220 ◽

Cited By ~ 15

Author(s):

Olesya Kravchenko ◽

Ivan Mitroshin ◽

Stanislav Nikonov ◽

Wolfgang Piendl ◽

Maria Garber

Keyword(s):

Ribosomal Protein ◽

Methanococcus Jannaschii ◽

Terminal Fragment ◽

Ribosomal Stalk

Ligand field molecular dynamics simulation of Pt(II)-phenanthroline binding to N-terminal fragment of amyloid-β peptide

PLoS ONE ◽

10.1371/journal.pone.0193668 ◽

2018 ◽

Vol 13 (3) ◽

pp. e0193668 ◽

Cited By ~ 4

Author(s):

Matthew Turner ◽

Shaun T. Mutter ◽

Robert J. Deeth ◽

James A. Platts

Keyword(s):

Molecular Dynamics ◽

Amyloid Β ◽

Dynamics Simulation ◽

Ligand Field ◽

Amyloid Β Peptide ◽

Changes in the level of poly(Phe) synthesis in Escherichia coli ribosomes containing mutants of L4 ribosomal protein from Thermus thermophilus can be explained by structural changes in the peptidyltransferase center: a molecular dynamics simulation analysis

European Biophysics Journal ◽

10.1007/s00249-006-0076-4 ◽

2006 ◽

Vol 35 (8) ◽

pp. 675-683

Author(s):

G. Papadopoulos ◽

S. Grudinin ◽

D. L. Kalpaxis ◽

T. Choli-Papadopoulou

Keyword(s):

Escherichia Coli ◽

Molecular Dynamics ◽

Ribosomal Protein ◽

Structural Changes ◽

Simulation Analysis ◽

Thermus Thermophilus ◽

Dynamics Simulation ◽

Peptidyltransferase Center

Molecular dynamics simulation on the effect of transition metal binding to the N-terminal fragment of amyloid-β

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.2018.1555490 ◽

2019 ◽

Vol 37 (17) ◽

pp. 4590-4600 ◽

Cited By ~ 3

Author(s):

Matthew Turner ◽

Shaun T. Mutter ◽

James A. Platts

Keyword(s):

Molecular Dynamics ◽

Transition Metal ◽

Metal Binding ◽

Amyloid Β ◽

Dynamics Simulation ◽

Molecular dynamics simulations of the active matrix metalloproteinase-2: Positioning of the N-terminal fragment and binding of a small peptide substrate

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.21894 ◽

2008 ◽

Vol 72 (1) ◽

pp. 50-61 ◽

Cited By ~ 14

Author(s):

Natalia Díaz ◽

Dimas Suárez

Keyword(s):

Molecular Dynamics ◽

Matrix Metalloproteinase ◽

Molecular Dynamics Simulations ◽

Matrix Metalloproteinase 2 ◽

Peptide Substrate ◽

Small Peptide ◽

Active Matrix ◽

Terminal Fragment ◽

Dynamics Simulations

Structural analysis of the N-terminal fragment of the antiangiogenic protein endostatin: A molecular dynamics study

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.23096 ◽

2011 ◽

Vol 79 (9) ◽

pp. 2684-2692 ◽

Cited By ~ 11

Author(s):

Pedro Henrique Monteiro Torres ◽

Gabriel Limaverde Soares Costa Sousa ◽

Pedro Geraldo Pascutti

Keyword(s):

Molecular Dynamics ◽

Structural Analysis ◽