Molecular dynamics simulation of the solution structure of the C-terminal fragment of L7/L12 ribosomal protein

Biopolymers ◽

10.1002/bip.360300120 ◽

1990 ◽

Vol 30 (1-2) ◽

pp. 205-209 ◽

Author(s):

Johan Åqvist ◽

Orlando Tapia

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Ribosomal Protein ◽

Solution Structure ◽

Dynamics Simulation ◽

Terminal Fragment

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A molecular dynamics simulation of the C-terminal fragment of the L7/L12 ribosomal protein in solution

Chemical Physics ◽

10.1016/0301-0104(91)87085-a ◽

1991 ◽

Vol 158 (2-3) ◽

pp. 501-512 ◽

Author(s):

Valerie Daggett ◽

Michael Levitt

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Ribosomal Protein ◽

Dynamics Simulation ◽

Terminal Fragment

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Effects of Urea, Tetramethyl Urea, and TrimethylamineN-Oxide on Aqueous Solution Structure and Solvation of Protein Backbones: A Molecular Dynamics Simulation Study

The Journal of Physical Chemistry B ◽

10.1021/jp9084926 ◽

2010 ◽

Vol 114 (1) ◽

pp. 557-568 ◽

Author(s):

Haiyan Wei ◽

Yubo Fan ◽

Yi Qin Gao

Keyword(s):

Molecular Dynamics ◽

Aqueous Solution ◽

Molecular Dynamics Simulation ◽

Simulation Study ◽

Solution Structure ◽

Dynamics Simulation ◽

Protein Backbones

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Solution Structure of a Type 1 H Antigen Trisaccharide at a Micellar Surface: NMR Relaxation and Molecular Dynamics Simulation Studies

The Journal of Physical Chemistry B ◽

10.1021/jp0136462 ◽

2002 ◽

Vol 106 (20) ◽

pp. 5275-5280 ◽

Author(s):

Kristina Lycknert ◽

Torgny Rundlöf ◽

Göran Widmalm

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Nmr Relaxation ◽

Dynamics Simulation ◽

Simulation Studies

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Molecular Dynamics Simulation of the Solution Structure near the Solid−Liquid Interface between the NaCl(100) and NaCl−KCl−H2O Solutions

Crystal Growth & Design ◽

10.1021/cg025513r ◽

2003 ◽

Vol 3 (2) ◽

pp. 209-213 ◽

Author(s):

Hirohisa Uchida ◽

Hiroshi Takiyama ◽

Masakuni Matsuoka

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Liquid Interface ◽

Dynamics Simulation ◽

Solid Liquid Interface ◽

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Ligand field molecular dynamics simulation of Pt(II)-phenanthroline binding to N-terminal fragment of amyloid-β peptide

PLoS ONE ◽

10.1371/journal.pone.0193668 ◽

2018 ◽

Vol 13 (3) ◽

pp. e0193668 ◽

Author(s):

Matthew Turner ◽

Shaun T. Mutter ◽

Robert J. Deeth ◽

James A. Platts

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dynamics Simulation ◽

Ligand Field ◽

Amyloid Β Peptide ◽

Terminal Fragment

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Changes in the level of poly(Phe) synthesis in Escherichia coli ribosomes containing mutants of L4 ribosomal protein from Thermus thermophilus can be explained by structural changes in the peptidyltransferase center: a molecular dynamics simulation analysis

European Biophysics Journal ◽

10.1007/s00249-006-0076-4 ◽

2006 ◽

Vol 35 (8) ◽

pp. 675-683

Author(s):

G. Papadopoulos ◽

S. Grudinin ◽

D. L. Kalpaxis ◽

T. Choli-Papadopoulou

Keyword(s):

Escherichia Coli ◽

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Ribosomal Protein ◽

Structural Changes ◽

Simulation Analysis ◽

Thermus Thermophilus ◽

Dynamics Simulation ◽

Peptidyltransferase Center

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Solution structure of α-conotoxin MI determined by -NMR spectroscopy and molecular dynamics simulation with the explicit solvent water

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology ◽

10.1016/s0167-4838(97)00140-4 ◽

1997 ◽

Vol 1343 (2) ◽

pp. 327-334 ◽

Author(s):

Hiroaki Gouda ◽

Ken-ichi Yamazaki ◽

Jun Hasegawa ◽

Yuji Kobayashi ◽

Yuji Nishiuchi ◽

...

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nmr Spectroscopy ◽

Solution Structure ◽

Dynamics Simulation ◽

Solvent Water ◽

Explicit Solvent

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Solution structure of a conserved DNA sequence from the HIV-1 genome: Restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra

Biochemistry ◽

10.1021/bi00212a007 ◽

1993 ◽

Vol 32 (49) ◽

pp. 13419-13431 ◽

Author(s):

Anwer Mujeeb ◽

Sean M. Kerwin ◽

George L. Kenyon ◽

Thomas L. James

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Dna Sequence ◽

Torsion Angle ◽

Nmr Spectra ◽

Solution Structure ◽

Dynamics Simulation ◽

Two Dimensional ◽

Hiv 1 ◽

Restrained Molecular Dynamics

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Solution Structure of HIV-1 Protease Flaps Probed by Comparison of Molecular Dynamics Simulation Ensembles and EPR Experiments

Journal of the American Chemical Society ◽

10.1021/ja800893d ◽

2008 ◽

Vol 130 (23) ◽

pp. 7184-7185 ◽

Author(s):

Fangyu Ding ◽

Melinda Layten ◽

Carlos Simmerling

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Solution Structure ◽

Dynamics Simulation ◽

Epr Experiments ◽

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Molecular dynamics simulation on the effect of transition metal binding to the N-terminal fragment of amyloid-β

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.2018.1555490 ◽

2019 ◽

Vol 37 (17) ◽

pp. 4590-4600 ◽

Author(s):

Matthew Turner ◽

Shaun T. Mutter ◽

James A. Platts

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Transition Metal ◽

Metal Binding ◽

Dynamics Simulation ◽

Terminal Fragment

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