Fast-NPS—A Markov Chain Monte Carlo-based analysis tool to obtain structural information from single-molecule FRET measurements

2017 ◽  
Vol 219 ◽  
pp. 377-389 ◽  
Author(s):  
Tobias Eilert ◽  
Maximilian Beckers ◽  
Florian Drechsler ◽  
Jens Michaelis
2019 ◽  
Author(s):  
Mohamadreza Fazel ◽  
Michael J. Wester ◽  
Hanieh Mazloom-Farsibaf ◽  
Marjolein B. M. Meddens ◽  
Alexandra Eklund ◽  
...  

In single molecule localization-based super-resolution imaging, high labeling density or the desire for greater data collection speed can lead to clusters of overlapping emitter images in the raw super-resolution image data. We describe a Bayesian inference approach to multiple-emitter fitting that uses Reversible Jump Markov Chain Monte Carlo to identify and localize the emitters in dense regions of data. This formalism can take advantage of any prior information, such as emitter intensity and density. The output is both a posterior probability distribution of emitter locations that includes uncertainty in the number of emitters and the background structure, and a set of coordinates and uncertainties from the most probable model.


2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Raja H. Ali ◽  
Mikael Bark ◽  
Jorge Miró ◽  
Sayyed A. Muhammad ◽  
Joel Sjöstrand ◽  
...  

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Mohamadreza Fazel ◽  
Michael J. Wester ◽  
Hanieh Mazloom-Farsibaf ◽  
Marjolein B. M. Meddens ◽  
Alexandra S. Eklund ◽  
...  

Abstract In single molecule localization-based super-resolution imaging, high labeling density or the desire for greater data collection speed can lead to clusters of overlapping emitter images in the raw super-resolution image data. We describe a Bayesian inference approach to multiple-emitter fitting that uses Reversible Jump Markov Chain Monte Carlo to identify and localize the emitters in dense regions of data. This formalism can take advantage of any prior information, such as emitter intensity and density. The output is both a posterior probability distribution of emitter locations that includes uncertainty in the number of emitters and the background structure, and a set of coordinates and uncertainties from the most probable model.


1994 ◽  
Author(s):  
Alan E. Gelfand ◽  
Sujit K. Sahu

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