The pattern of sedimentary bacterial communities varies with latitude within a large eutrophic lake

Limnologica ◽  
2021 ◽  
Vol 87 ◽  
pp. 125860
Author(s):  
Xiaojian Sun ◽  
Xinyi Cao ◽  
Dayong Zhao ◽  
Jin Zeng ◽  
Rui Huang ◽  
...  
2013 ◽  
Vol 25 (6) ◽  
pp. 1186-1194 ◽  
Author(s):  
Keqiang Shao ◽  
Guang Gao ◽  
Yongping Wang ◽  
Xiangming Tang ◽  
Boqiang Qin

Author(s):  
Lei Zhang ◽  
Yu Cheng ◽  
Guang Gao ◽  
Jiahu Jiang

Sediment bacterial communities are critical for the circulation of nutrients in lake ecosystems. However, the bacterial community function and co-occurrence models of lakes have not been studied in depth. In this study, we observed significant seasonal changes and non-significant spatial changes in the beta diversity and community structure of sediment bacteria in Lake Chaohu. Through linear discriminant analysis effect size (LEfSe), we observed that certain taxa (from phylum to genus) have consistent enrichment between seasons. The sudden appearance of a Firmicutes population in spring samples from the Zhaohe River, an estuary of Lake Chaohu, and the dominance of Firmicutes populations in other regions suggested that exogenous pollution and environmental induction strongly impacted the assembly of bacterial communities in the sediments. Several taxa that serve as intermediate centers in Co-occurrence network analysis (i.e., Pedosphaeraceae, Phycisphaeraceae, Anaerolineaceae, and Geobacteraceae) may play an important role in sediments. Furthermore, compared with previous studies of plants and animals, the results of our study suggest that various organisms, including microorganisms, are resistant to environmental changes and/or exogenous invasions, allowing them to maintain their community structure.


2009 ◽  
Vol 55 (6) ◽  
pp. 776-782 ◽  
Author(s):  
Xiangming Tang ◽  
Guang Gao ◽  
Liping Zhu ◽  
Jianying Chao ◽  
Boqiang Qin

Organic aggregates (OA) in aquatic ecosystems harbour diverse microbial communities. The colonization and growth of OA-attached bacteria are important processes in the degradation and transformation of the particles. The development of efficient and comparative DNA extraction methods is one of the most critical steps in the study of the composition and diversity of OA-attached bacterial communities. To evaluate whether different DNA extraction procedures affect the measurement of bacterial community composition, we compared four in situ lysis procedures using OA from three locations in a shallow eutrophic lake (Lake Taihu, China). The extracted DNA was analyzed using denaturing gradient gel electrophoresis profiles. We found that the choice of DNA extraction protocol had a significant influence on the fingerprints of the OA-attached bacterial community. This was shown not only in the number of bands but also in their relative representation of certain DNA bands. Using the bead-beating DNA extraction method in the presence of hexadecyltrimethylammonium bromide, we found that crude microbial DNA could be extracted efficiently from different OA types. This protocol is reproducible and gives very pure DNA of relatively high molecular mass. More importantly, the protocol provided more representative and informative data on the diversity of OA-attached bacterial communities.


2017 ◽  
Vol 24 (24) ◽  
pp. 19795-19806 ◽  
Author(s):  
Hainan Wu ◽  
Yi Li ◽  
Jing Zhang ◽  
Lihua Niu ◽  
Wenlong Zhang ◽  
...  

2018 ◽  
Vol 125 (6) ◽  
pp. 1626-1641 ◽  
Author(s):  
E.N. Kashinskaya ◽  
E.P. Simonov ◽  
M.R. Kabilov ◽  
G.I. Izvekova ◽  
K.B. Andree ◽  
...  

2008 ◽  
Vol 54 (12) ◽  
pp. 1053-1063 ◽  
Author(s):  
Jin Zeng ◽  
Liu-Yan Yang ◽  
Yi Liang ◽  
Jia-Yun Li ◽  
Lin Xiao ◽  
...  

Bacterial community structure and the effects of several environmental factors on the microbial community distribution were investigated in the sediment of the eutrophic Lake Xuanwu. Profiles of bacterial communities were generated using denaturing gradient gel electrophoresis (DGGE), and the results were interpreted with multivariate statistical analysis. Five major variables in sediment were examined in a principal component analysis, which indicates notable differences of physicochemical parameters among different sites of the lake. To assess changes in the genetic diversity of bacterial communities of different sampling sites, DGGE band patterns were analyzed by multidimensional scaling analysis, which indicated that sampling sites having similar environmental characteristics also have the similar microbial communities. Canonical correspondence analysis demonstrated that pH and redox potential had significant effects on the bacterial community composition in the sediments. Analysis of DNA sequences revealed that the dominant bacterial groups in Lake Xuanwu belonged to Proteobacteria , Actinobacteria , Verrucomicrobia , and Nitrospirae , which are commonly isolated from freshwater ecosystems.


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