scholarly journals The controlled introduction of multiple negative charge at single amino acid sites in subtilisin Bacillus lentus

1999 ◽  
Vol 7 (11) ◽  
pp. 2293-2301 ◽  
Author(s):  
Benjamin G. Davis ◽  
Xiao Shang ◽  
Grace DeSantis ◽  
Richard R. Bott ◽  
J.Bryan Jones
1999 ◽  
Vol 7 (11) ◽  
pp. 2303-2311 ◽  
Author(s):  
Benjamin G. Davis ◽  
Kanjai Khumtaveeporn ◽  
Richard R. Bott ◽  
J.Bryan Jones

2001 ◽  
Vol 281 (3) ◽  
pp. R902-R908 ◽  
Author(s):  
Joseph B. Kim ◽  
Ågot Johansson ◽  
Susanne Holmgren ◽  
J. Michael Conlon

Two molecular forms of gastrin-releasing peptide (GRP) were isolated from an extract of the intestine of the tetraploid frog Xenopus laevis. The primary structure of GRP-1 (APTSQQHTEQ10LSRSNINTRG20 SHWAVGHLM.NH2) differs from that of GRP-2 by a single amino acid substitution (Asn15→ Thr15). GRP-(20–29) peptide (neuromedin C) was also isolated from the extract. Synthetic GRP-1 produced concentration-dependent contractions of longitudinal smooth muscle strips from Xenopus cardiac stomach (pD2 = 8.93 ± 0.32; n = 6). The responses were unaffected by tetrodotoxin, atropine, and methysergide, indicating a direct action of the peptide on smooth muscle cells. GRP-1 elicited concentration-dependent relaxations of precontracted (5 μM carbachol) circular smooth muscle strips from the same region (pD2 = 8.96 ± 0.21; n = 8). The responses were significantly ( P < 0.05) attenuated (71 ± 24% decrease in maximum response; n = 6) by indomethacin, indicating mediation, at least in part, by prostanoids. Despite the fact that Xenopus GRP-1 differs from pig GRP at 15 amino acid sites, both peptides are equipotent and equally effective for both contractile and relaxant responses, demonstrating that selective evolutionary pressure has acted to conserve the functional COOH-terminal domain in the peptide. The data suggest a physiologically important role for GRP in the regulation of gastric motility in X. laevis.


2001 ◽  
Vol 17 (7) ◽  
pp. 660-661 ◽  
Author(s):  
Y. Suzuki ◽  
T. Gojobori ◽  
M. Nei

2004 ◽  
Vol 78 (7) ◽  
pp. 3252-3261 ◽  
Author(s):  
Denis Fargette ◽  
Agnès Pinel ◽  
Zakia Abubakar ◽  
Oumar Traoré ◽  
Christophe Brugidou ◽  
...  

ABSTRACT Fourteen isolates of Rice yellow mottle virus (RYMV) were selected as representative of the genetic variability of the virus in Africa from a total set of 320 isolates serologically typed or partially sequenced. The 14 isolates were fully sequenced and analyzed together with two previously reported sequences. RYMV had a genomic organization similar to that of Cocksfoot mottle sobemovirus. The average nucleotide diversity among the 16 isolates of RYMV was 7%, and the maximum diversity between any two isolates was 10%. A strong conservative selection was apparent on both synonymous and nonsynonymous substitutions, through the amino acid replacement pattern, on the genome size, and through the limited number of indel events. Furthermore, there was a lack of positive selection on single amino acid sites and no evidence of recombination events. RYMV diversity had a pronounced and characteristic geographic structure. The branching order of the clades correlated with the geographic origin of the isolates along an east-to-west transect across Africa, and there was a marked decrease in nucleotide diversity moving westward across the continent. The insertion-deletion polymorphism was related to virus phylogeny. There was a partial phylogenetic incongruence between the coat protein gene and the rest of the genome. Overall, our results support the hypothesis that RYMV originated in East Africa and then dispersed and differentiated gradually from the east to the west of the continent.


2008 ◽  
Vol 67 (5) ◽  
pp. 551-559 ◽  
Author(s):  
J. R. Cavatorta ◽  
A. E. Savage ◽  
I. Yeam ◽  
S. M. Gray ◽  
M. M. Jahn

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