Molecular dynamics simulations on protein folding and protein structure prediction

Journal of Molecular Graphics and Modelling ◽

10.1016/s1093-3263(00)80122-9 ◽

2000 ◽

Vol 18 (4-5) ◽

pp. 553

Author(s):

Peter Kollman

Keyword(s):

Molecular Dynamics ◽

Protein Folding ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Dynamics Simulations

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Protein Structure Prediction Using an Associated Memory Hamiltonian and All-Atom Molecular Dynamics Simulations

Bulletin of the Korean Chemical Society ◽

10.5012/bkcs.2008.29.11.2172 ◽

2008 ◽

Vol 29 (11) ◽

pp. 2172-2182 ◽

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Dynamics Simulations

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Structural conversion of the transformer protein RfaH: new insights derived from protein structure prediction and molecular dynamics simulations

Journal of Biomolecular Structure and Dynamics ◽

10.1080/07391102.2014.994188 ◽

2015 ◽

Vol 33 (10) ◽

pp. 2173-2179 ◽

Author(s):

Nicole Balasco ◽

Daniela Barone ◽

Luigi Vitagliano

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Structural Conversion ◽

Dynamics Simulations

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State of the art in studying protein folding and protein structure prediction using molecular dynamics methods

Journal of Molecular Graphics and Modelling ◽

10.1016/s1093-3263(00)00126-1 ◽

2001 ◽

Vol 19 (1) ◽

pp. 146-149 ◽

Author(s):

M.R Lee ◽

Y Duan ◽

P.A Kollman

Keyword(s):

Molecular Dynamics ◽

Protein Folding ◽

Protein Structure ◽

Protein Structure Prediction ◽

Structure Prediction ◽

State Of The Art ◽

Molecular Dynamics Methods

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Faculty Opinions recommendation of Experimental resolution of early steps in protein folding: testing molecular dynamics simulations.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1019474.220524 ◽

2004 ◽

Author(s):

Angel García

Keyword(s):

Molecular Dynamics ◽

Protein Folding ◽

Molecular Dynamics Simulations ◽

Experimental Resolution ◽

Dynamics Simulations

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Faculty Opinions recommendation of Molecular dynamics simulations of the native and partially folded states of ubiquitin: influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1088149.542736 ◽

2007 ◽

Author(s):

Bernard Montgomery Pettitt

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Structure And Dynamics ◽

Dynamics Simulations ◽

Partially Folded States ◽

Protein Structure And Dynamics

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De novo protein structure prediction using ultra-fast molecular dynamics simulation

PLoS ONE ◽

10.1371/journal.pone.0205819 ◽

2018 ◽

Vol 13 (11) ◽

pp. e0205819 ◽

Author(s):

Ngaam J. Cheung ◽

Wookyung Yu

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulation ◽

Protein Structure Prediction ◽

Structure Prediction ◽

De Novo ◽

Dynamics Simulation

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Probing Protein Folding Landscape by Using Combined Force Spectroscopy and Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2017.11.2284 ◽

2018 ◽

Vol 114 (3) ◽

pp. 412a

Author(s):

Ha H. Truong ◽

Susan Marqusee

Keyword(s):

Molecular Dynamics ◽

Protein Folding ◽

Molecular Dynamics Simulations ◽

Force Spectroscopy ◽

Dynamics Simulations

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Improved cryoEM-Guided Iterative Molecular Dynamics–Rosetta Protein Structure Refinement Protocol for High Precision Protein Structure Prediction

Journal of Chemical Theory and Computation ◽

10.1021/ct500995d ◽

2015 ◽

Vol 11 (3) ◽

pp. 1337-1346 ◽

Author(s):

Steffen Lindert ◽

J. Andrew McCammon

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Protein Structure Prediction ◽

High Precision ◽

Structure Prediction ◽

Structure Refinement ◽

Protein Structure Refinement

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Describing Protein Folding Kinetics by Molecular Dynamics Simulations. 1. Theory†

The Journal of Physical Chemistry B ◽

10.1021/jp037421y ◽

2004 ◽

Vol 108 (21) ◽

pp. 6571-6581 ◽

Author(s):

William C. Swope ◽

Jed W. Pitera ◽

Frank Suits

Keyword(s):

Molecular Dynamics ◽

Protein Folding ◽

Molecular Dynamics Simulations ◽

Folding Kinetics ◽

Dynamics Simulations

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Protein folding: Molecular dynamics simulations and in vitro studies for probing mechanism of urea- and guanidinium chloride-induced unfolding of horse cytochrome-c

International Journal of Biological Macromolecules ◽

10.1016/j.ijbiomac.2018.10.186 ◽

2019 ◽

Vol 122 ◽

pp. 695-704 ◽

Author(s):

Sabab Hasan Khan ◽

Amresh Prakash ◽

Preeti Pandey ◽

Andrew M. Lynn ◽

Asimul Islam ◽

...

Keyword(s):

Molecular Dynamics ◽

Protein Folding ◽

Cytochrome C ◽

Molecular Dynamics Simulations ◽

In Vitro Studies ◽

Guanidinium Chloride ◽

Dynamics Simulations ◽

Horse Cytochrome

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