Frameshifts and deletions during in vitro translesion synthesis past Pt–DNA adducts by DNA polymerases β and η

DNA Repair ◽  
2002 ◽  
Vol 1 (12) ◽  
pp. 1003-1016 ◽  
Author(s):  
Ekaterina Bassett ◽  
Alexandra Vaisman ◽  
Kristen A. Tropea ◽  
Chad M. McCall ◽  
Chikahide Masutani ◽  
...  
1995 ◽  
Vol 8 (3) ◽  
pp. 422-430 ◽  
Author(s):  
Gary J. Latham ◽  
Constance M. Harris ◽  
Thomas M. Harris ◽  
R. Stephen Lloyd

Biochemistry ◽  
2004 ◽  
Vol 43 (35) ◽  
pp. 11312-11320 ◽  
Author(s):  
Naomi Suzuki ◽  
Manabu Yasui ◽  
Y. R. Santosh Laxmi ◽  
Haruo Ohmori ◽  
Fumio Hanaoka ◽  
...  

Biochemistry ◽  
2004 ◽  
Vol 43 (20) ◽  
pp. 6304-6311 ◽  
Author(s):  
Naomi Suzuki ◽  
Shinji Itoh ◽  
Kinning Poon ◽  
Chikahide Masutani ◽  
Fumio Hanaoka ◽  
...  

Planta Medica ◽  
2021 ◽  
Author(s):  
Amandine Nachtergael ◽  
Déborah Lanterbecq ◽  
Martin Spanoghe ◽  
Alexandra Belayew ◽  
Pierre Duez

AbstractTranslesion synthesis is a DNA damage tolerance mechanism that relies on a series of specialized DNA polymerases able to bypass a lesion on a DNA template strand during replication or post-repair synthesis. Specialized translesion synthesis DNA polymerases pursue replication by inserting a base opposite to this lesion, correctly or incorrectly depending on the lesion nature, involved DNA polymerase(s), sequence context, and still unknown factors. To measure the correct or mutagenic outcome of 8-oxo-7,8-dihydro-2′-deoxyguanosine bypass by translesion synthesis, a primer-extension assay was performed in vitro on a template DNA bearing this lesion in the presence of nuclear proteins extracted from human intestinal epithelial cells (FHs 74 Int cell line); the reaction products were analyzed by both denaturing capillary electrophoresis (to measure the yield of translesion elongation) and pyrosequencing (to determine the identity of the nucleotide inserted in front of the lesion). The influence of 14 natural polyphenols on the correct or mutagenic outcome of translesion synthesis through 8-oxo-7,8-dihydro-2′-deoxyguanosine was then evaluated in 2 experimental conditions by adding the polyphenol either (i) to the reaction mix during the primer extension assay; or (ii) to the culture medium, 24 h before cell harvest and nuclear proteins extraction. Most of the tested polyphenols significantly influenced the outcome of translesion synthesis, either through an error-free (apigenin, baicalein, sakuranetin, and myricetin) or a mutagenic pathway (epicatechin, chalcone, genistein, magnolol, and honokiol).


Biochemistry ◽  
2006 ◽  
Vol 45 (39) ◽  
pp. 12167-12174 ◽  
Author(s):  
Manabu Yasui ◽  
Naomi Suzuki ◽  
Y. R. Santosh Laxmi ◽  
Shinya Shibutani

2006 ◽  
Vol 281 (50) ◽  
pp. 38244-38256 ◽  
Author(s):  
Jeong-Yun Choi ◽  
Goutam Chowdhury ◽  
Hong Zang ◽  
Karen C. Angel ◽  
Choua C. Vu ◽  
...  

Biochemistry ◽  
1999 ◽  
Vol 38 (34) ◽  
pp. 11026-11039 ◽  
Author(s):  
Alexandra Vaisman ◽  
Susan E. Lim ◽  
Steve M. Patrick ◽  
William C. Copeland ◽  
David C. Hinkle ◽  
...  

2019 ◽  
Vol 47 (13) ◽  
pp. 6769-6782 ◽  
Author(s):  
Tomohiko Sugiyama ◽  
Yizhang Chen

Abstract We reconstituted two biochemical processes that may contribute to UV-induced mutagenesis in vitro and analysed the mutational profiles in the products. One process is translesion synthesis (TLS) by DNA polymerases (Pol) δ, η and ζ, which creates C>T transitions at pyrimidine dimers by incorporating two dAMPs opposite of the dimers. The other process involves spontaneous deamination of cytosine, producing uracil in pyrimidine dimers, followed by monomerization of the dimers by secondary UV irradiation, and DNA synthesis by Pol δ. The mutational spectrum resulting from deamination without translesion synthesis is similar to a mutational signature found in melanomas, suggesting that cytosine deamination encountered by the replicative polymerase has a prominent role in melanoma development. However, CC>TT dinucleotide substitution, which is also commonly observed in melanomas, was produced almost exclusively by TLS. We propose that both TLS-dependent and deamination-dependent mutational processes are likely involved in UV-induced melanoma development.


Biochemistry ◽  
2006 ◽  
Vol 45 (19) ◽  
pp. 6187-6194 ◽  
Author(s):  
Manabu Yasui ◽  
Y. R. Santosh Laxmi ◽  
Sreenivasa R. Ananthoju ◽  
Naomi Suzuki ◽  
Sung Yeon Kim ◽  
...  

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