Introduction to Genome Browsing with the UCSC Genome Browser

Author(s):  
Peter Schattner
2007 ◽  
pp. 17-34 ◽  
Author(s):  
Donna Karolchik ◽  
Gill Bejerano ◽  
Angie S. Hinrichs ◽  
Robert M. Kuhn ◽  
Webb Miller ◽  
...  

2017 ◽  
Vol 46 (D1) ◽  
pp. D762-D769 ◽  
Author(s):  
Jonathan Casper ◽  
Ann S Zweig ◽  
Chris Villarreal ◽  
Cath Tyner ◽  
Matthew L Speir ◽  
...  

Abstract The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis—12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors.


2013 ◽  
Vol 29 (23) ◽  
pp. 3003-3006 ◽  
Author(s):  
Brent S. Pedersen ◽  
Ivana V. Yang ◽  
Subhajyoti De

2014 ◽  
Vol 31 (5) ◽  
pp. 764-766 ◽  
Author(s):  
M. Haeussler ◽  
B. J. Raney ◽  
A. S. Hinrichs ◽  
H. Clawson ◽  
A. S. Zweig ◽  
...  

2014 ◽  
Vol 43 (D1) ◽  
pp. D670-D681 ◽  
Author(s):  
Kate R. Rosenbloom ◽  
Joel Armstrong ◽  
Galt P. Barber ◽  
Jonathan Casper ◽  
Hiram Clawson ◽  
...  

2009 ◽  
Vol 37 (Database) ◽  
pp. D755-D761 ◽  
Author(s):  
R. M. Kuhn ◽  
D. Karolchik ◽  
A. S. Zweig ◽  
T. Wang ◽  
K. E. Smith ◽  
...  

2015 ◽  
Vol 44 (D1) ◽  
pp. D717-D725 ◽  
Author(s):  
Matthew L. Speir ◽  
Ann S. Zweig ◽  
Kate R. Rosenbloom ◽  
Brian J. Raney ◽  
Benedict Paten ◽  
...  

2016 ◽  
Vol 2016 (11) ◽  
pp. pdb.prot093062 ◽  
Author(s):  
Jui-Hung Hung ◽  
Zhiping Weng

2012 ◽  
Vol 14 (2) ◽  
pp. 144-161 ◽  
Author(s):  
R. M. Kuhn ◽  
D. Haussler ◽  
W. J. Kent

BMC Genomics ◽  
2015 ◽  
Vol 16 (1) ◽  
Author(s):  
Jiyuan An ◽  
John Lai ◽  
David L A Wood ◽  
Atul Sajjanhar ◽  
Chenwei Wang ◽  
...  

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