Remotely sensed habitat variables are poor surrogates for functional traits of rocky reef fish assemblages

2016 ◽  
Vol 43 (4) ◽  
pp. 368-375 ◽  
Author(s):  
MELINDA A. COLEMAN ◽  
TIM INGLETON ◽  
RUSSELL B. MILLAR ◽  
PETER L. DAVIES ◽  
ALAN JORDAN ◽  
...  

SUMMARYConservation planning often relies on measures such as species richness and abundance to prioritize areas for protection. Nonetheless, alternative metrics such as functional traits have recently been shown to be useful complementary measures for detecting biological change. Timely conservation planning often precludes the collection of such detailed biological data relying instead on remotely-sensed habitat mapping as a surrogate for diversity. While there is evidence that habitat maps may predict taxonomic species richness and diversity in some coastal ecosystems, it is unknown whether similar strong relationships exist for functional traits and functional multimetrics. We compared the performance of physical habitat structural complexity obtained from high definition swath mapping in explaining variation in traditional taxonomic metrics as well as functional traits (e.g., maximum length, trophic level, gregariousness) and functional multimetrics (e.g., functional richness, dispersion) of fish assemblages. Reef complexity measures were good surrogates for fish species richness and abundance but not for functional traits or multimetrics, except functional richness at the scale of 1 m. Remotely sensed habitat maps may not be a good surrogate for predicting functional traits and multimetrics of fish assemblages, and must be used with caution when maximizing such aspects of assemblages is a priority for conservation planning.

2015 ◽  
Vol 21 (8) ◽  
pp. 977-990 ◽  
Author(s):  
Kara N. Youngentob ◽  
Hwan-Jin Yoon ◽  
John Stein ◽  
David B. Lindenmayer ◽  
Alex A. Held

2018 ◽  
Author(s):  
Joel Williams ◽  
Alan Jordan ◽  
David Harasti ◽  
Peter Davies ◽  
Tim Ingleton

AbstractThe spatial distribution of a species assemblage is often determined by habitat and climate. In the marine environment, depth can become an important factor as degrading light leads to changes in the biological habitat structure. To date, much of the focus of ecological fish research has been based on reefs in less than 40 m with little research on the ecological role of mesophotic reefs. We deployed baited remote underwater stereo video systems (stereo-BRUVS) on temperate reefs in two depth categories: shallow (20-40m) and mesophotic (80-120m), off Port Stephens, Australia. Sites were selected using data collected by swath acoustic sounder to ensure stereo-BRUVS were deployed on reef. The sounder also provided rugosity, slope and relief data for each stereo-BRUVS deployment. Multivariate analysis indicates that there are significant differences in the fish assemblages between shallow and mesophotic reefs, primarily driven by Ophthalmolepis lineolatus and Notolabrus gymnogenis only occurring on shallow reefs and schooling species of fish that were unique to each depth category: Atypichthys strigatus on shallow reefs and Centroberyx affinis on mesophotic reefs. While shallow reefs had a greater species richness and abundance of fish when compared to mesophotic reefs, mesophotic reefs hosted the same species richness of fishery targeted species. Chrysophrys auratus (pink snapper) and Nemodactylus douglassii (grey morwong) are two highly targeted species in this region. While C. auratus was numerically more abundant on shallow reefs, mesophotic reefs provide habitat for larger fish. In comparison, N. douglassii were evenly distributed across all sites sampled. Generalized linear models revealed that depth and habitat type provided the most parsimonious model for predicting the distribution of C. auratus, while habitat type alone best predicted the distribution of N. douglassii. These results demonstrate the importance of mesophotic reefs to fishery targeted species and therefore have implications for informing the management of these fishery resources on shelf rocky reefs.


2014 ◽  
Vol 59 (No. 1) ◽  
pp. 35-44 ◽  
Author(s):  
Z. Valová ◽  
M. Janáč ◽  
J. Švanyga ◽  
P. Jurajda

In August 2007, the 0+ juvenile fish assemblage of the upper River Elbe was surveyed using electrofishing. Thirty-six localities were sampled along a 177 km long section between the towns of Verdek and Brandýs nad Labem (river km (RKM) 136–313). Four localities with natural riverbeds, 14 channelized stretches, nine beaches, and nine backwaters were sampled. Altogether, 4521 0+ juvenile fishes were caught, belonging to 26 species. A decrease in species richness and abundance was evident near Hradec Králové, while decreased species abundance was noted along the navigated stretch below Přelouč. The highest catch-per-unit-effort (CPUE), species richness, and Shannon index values were observed at beach habitats, the lowest in channelized habitats, and intermediate values in backwaters. Generally, rare beach habitats had significantly more rheophilic species than other habitats, while backwaters had significantly more eurytopic species and higher CPUE for limnophilic species. Backwaters and channel habitats, however, did not differ in any other 0+ fish assemblage parameter studied. The study demonstrated the importance of beaches for fish assemblages along navigable channels. Surprisingly, however, backwaters were not confirmed as important nursery habitats.


2010 ◽  
Vol 55 (No. 3) ◽  
pp. 123-136 ◽  
Author(s):  
P. Jurajda ◽  
Z. Adámek ◽  
M. Janáč ◽  
Z. Valová

The aim of this study was to provide the first account of fish and macroinvertebrate communities in a heavily degraded river basin in the Czech Republic. Fish and macrozoobenthos were surveyed at 18 sites in the Bílina River and 11 sites in tributary streams during June–July 2007. Fish were sampled by electrofishing and macrozoobenthos were collected by kick-sampling using a sweep net. The composition of macroinvertebrate assemblages in headwater and reference sites in the upper Bílina River indicated clean water with saprobic index (SI) 1.31–1.43 followed by a transitional stretch downstream the Kyjická reservoir (SI 2.05–2.32) and dramatic decline of water quality to SI 3.18 in the river stretch downstream of industrial and municipal pollution at Litvínov-Záluží. Despite several minor pollution sources on the subsequent downstream river stretch until its mouth into the Elbe River, the water quality indicators fluctuated in the range of lower betamesosaprobity (SI 2.06–2.58). Species richness and biodiversity indices followed a similar pattern as river saprobity. Twenty-three fish species were documented in the Bílina River basin. Chub (<I>Leuciscus cephalus</I>), gudgeon (<I>Gobio gobio</I>) and roach (<I>Rutilus rutilus</I>) were the most frequent species at the Bílina sites. Chub was the most numerous fish in the tributaries. Fish species richness in the longitudinal profile did not increase downstream in the Bílina mainstem, most likely because the presence of reservoirs and water pollution interrupted the river continuum pattern. Qualitative data on fish assemblages corresponded to the course of environmental stress. A sustainable fish community was documented only in the lowermost site in Ústí nad&nbsp;Labem near the confluence with the Elbe River. The Bílina River tributaries constitute potential refuges for fish in this basin.


2021 ◽  
Vol 22 (3) ◽  
pp. 480
Author(s):  
GABRIELLA LA MANNA ◽  
IVAN GUALA ◽  
DANIELE GRECH ◽  
FRANCESCO PERRETTI ◽  
FABIO RONCHETTI ◽  
...  

Accurate, rapid and cost-effective fish assemblage monitoring is fundamental for marine protected area (MPA) management as a pivotal tool to verify whether and to what extent MPA conservation objectives have been achieved and to redefine these objectives in the framework of an adaptive management. Recently, there has been a sharp increase in the number of video-based methods to study fish fauna, such as baited remote underwater video (BRUV) systems, that, depending on the objectives of the monitoring, can provide complementary or additional data to the more commonly used underwater visual census (UVC). Even though BRUV systems have been widely used in a wide range of geographic contexts and habitats, their use in the Mediterranean basin is still sporadic and the evaluation of the efficiency of BRUV systems and whether they can be used to complement other techniques needs investigation. Thus, the objective of this study was to assess the performance of a BRUV system in a Mediterranean MPA and to evaluate its effectiveness in assessing the structure of fish assemblages (abundance and species richness) by comparing estimates with those obtained by the UVC technique. The fish fauna were monitored by BRUV and UVC in the Capo Caccia – Isola Piana Marine Protected Area (Sardinia, Italy), in July and October-November 2020, at four sampling sites and two areas, hundreds of meters apart, for each site. Overall, 46 taxa and a total of 3620 individuals were observed by BRUV, while 36 taxa and a total of 2995 individuals were observed by UVC. The species first observed in front of the camera’s field of view and able to reach the maximum abundance were the planktivores (Chromis chromis and Oblada melanura) followed by several carnivorous species belonging to the families Labridae, Serranidae and Sparidae, and lastly two carnivores (Mullus surmuletus and Mugilidae spp.) and some high-level predators (Dentex dentex, Seriola dumerili, Sphyraena viridensis, Dicentrarchus labrax). The maximum species richness and abundance were reached between 39 and 50 min. The cumulative species richness increased until around 30 min. Species richness was higher during the BRUV compared to the UVC monitoring. The consistency in findings between BRUV and UVC and a better performance of BRUV in detecting some species (mainly high-level predators), supports BRUV as an additional technique for describing and quantifying species richness and abundance also in the Mediterranean Sea. Based on the results of this study, the advantages/disadvantages, shortcomings, suggestions and resources needed for the two techniques are outlined.


2020 ◽  
Author(s):  
Adrien Cheminée ◽  
Laurence Le Direach ◽  
Elodie Rouanet ◽  
Patrick Astruch ◽  
Adrien Goujard ◽  
...  

Abstract Coastal zones are ecosystems of high economic value but exposed to numerous disturbances, while they represent nurseries for many fish species, raising the issue of the preservation of their functions and services. In this context, the juvenile fish assemblages of all types of habitats present in shallow coastal zones were studied on the south-east coast of France using underwater visual censuses. The abiotic and biotic descriptors of the 14 habitat types individualized did not vary with time, except for a higher cover percentage and canopy height of macrophytes in the warm period, which increased the three-dimensional structure of some habitats. The taxonomic composition and density of juvenile fish assemblages were analyzed using both multivariate and univariate descriptors, after grouping the 57 fish species recorded into 41 well-individualized taxa. Juvenile fishes were recorded in all habitat types, with higher mean species richness and abundance during the warm than the cold period. The richest habitats in terms of both species richness and abundance were the natural rocky substrates and the interfaces between Posidonia beds and the other habitats. Although juvenile fish assemblages differed among habitat types and between periods, the most abundant fish species (Atherina sp., Sarpa salpa, Gobiidae, Symphodus spp., Pagellus spp. and several Diplodus species) colonized different habitat types (from 7 to 14) during their juvenile life. This study provided evidence of the role of all types of shallow coastal habitats as fish nurseries and their varying pattern of occupation in space and time by the different juvenile stages. It highlighted the importance of the mosaic of habitats and interfaces for the complete development of all juvenile life stages of fishes, and for the preservation of a high diversity of coastal fish assemblages and fisheries resources in the Mediterranean Sea.


2021 ◽  
Author(s):  
Alejandro A. Schaaf ◽  
Daniela Gomez ◽  
Ever Tallei ◽  
Constanza G. Vivanco ◽  
Román A. Ruggera

Abstract Logging causes changes in habitat structure, which can potentially lead to variations in taxonomic and functional richness of biodiversity. In this paper, we examined how logging in subtropical Andean forests has influenced taxonomic and functional diversity of cavity-nesting birds. We used point-counts to examine the effects of logging on taxonomic and functional traits of avian communities (Functional Richness, Functional evenness, Functional Divergence, and Community-weighted mean). We found that logging changes bird richness and abundance, although it had no effect on the functional response to the measured traits. The comparison of our results with those of temperate forests of Canada and Chile reveals differences in the functional richness, with a lower impact of logging on functional traits. We highlight the importance of including functional traits in the analyses, since the reduction in the species richness and abundance may not translate into functional changes within the ecosystem.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Alejandro A. Schaaf ◽  
Daniela Gomez ◽  
Ever Tallei ◽  
Constanza G. Vivanco ◽  
Román A. Ruggera

AbstractLogging causes changes in habitat structure, which can potentially lead to variations in taxonomic and functional richness of biodiversity. Studies on how functional traits in birds are affected by logging operations can provide an important element for the understanding of ecosystem processes. In this paper, we examined how logging in subtropical Andean forests influenced taxonomic and functional diversity of cavity-nesting birds. We used these results to compare how logging affected ecosystem functions in temperate and subtropical forests of the Americas. We used point-counts to examine the effects of logging on taxonomic and functional traits in avian communities (Functional Richness, Functional evenness, Functional Divergence, and Community-weighted mean). We found that logging changed bird richness and abundance, although it had no effect on the functional response to the measured traits. The comparison of our results with those of temperate forests of Canada and Chile reveals differences in the functional richness of birds in these habitats, with a lower impact of logging on functional traits. We highlight the importance of including functional traits in the analyses, since the reduction in the species richness and abundance may not be translated into functional changes within the ecosystem.


2011 ◽  
Vol 9 (4) ◽  
pp. 869-879 ◽  
Author(s):  
Paulo R. Medeiros ◽  
Ricardo S. Rosa ◽  
Ronaldo B. Francini-Filho

In recent years, many studies investigated how density-dependent factors, such as shortages in microhabitat and food availability influence the structure of reef fish assemblages. Most of what is currently known, however, comes from comparisons of isolated patch reefs and from correlations between fish abundance and one or few microhabitat variables. In addition, most studies were done in the Caribbean and Indo-Pacific regions, whereas the South Atlantic region has been, to date, understudied. The present study evaluated spatial and temporal variations in reef fish abundance and species richness in a continuous rocky reef and adjacent unconsolidated habitats in a Southwestern Atlantic reef, using underwater techniques to assess both fish numbers and microhabitat variables (depth, rugosity, number of crevices and percent cover of live benthic organisms, bare rock, sand, and limestone). Higher species richness was observed at consolidated substratum stations on both sampling periods (May and October), but fish abundance did not show a significant spatial variation. Topographical complexity and percent cover of algae (except coralline algae) were amongst the most important determinants of species richness, and correlations between fish size and refuge crevice size were observed. The non-random patterns of spatial variation in species richness, and to a lesser extent, fish abundance, were related to differences in substratum characteristics and the inherent characteristics of fishes (i.e. habitat preferences) and not to geographical barriers restraining fish movement. This study highlights the importance of concomitantly assessing several microhabitat variables to determine their relative influence in reef fish assemblages.


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