Hamiltonian Replica Exchange Method Study of Escherichia coli and Yersinia pestis HPPK

2009 ◽  
Vol 113 (50) ◽  
pp. 16197-16208 ◽  
Author(s):  
Li Su ◽  
Robert I. Cukier
Keyword(s):  
Escherichia Coli ◽  
Yersinia Pestis ◽  
Replica Exchange ◽  
Exchange Method ◽  
Hamiltonian Replica Exchange ◽  
Replica Exchange Method

Hamiltonian Replica Exchange Method Studies of a Leucine Zipper Dimer

2009 ◽  
Vol 113 (28) ◽  
pp. 9595-9605 ◽  
Author(s):  
Li Su ◽  
Robert I. Cukier
Keyword(s):  
Leucine Zipper ◽  
Replica Exchange ◽  
Exchange Method ◽  
Hamiltonian Replica Exchange ◽  
Replica Exchange Method

Efficient sampling of ion motions in molecular dynamics simulations on DNA: Variant Hamiltonian replica exchange method

2008 ◽  
Vol 454 (4-6) ◽  
pp. 391-395 ◽  
Author(s):  
Donghong Min ◽  
Hongzhi Li ◽  
Guohui Li ◽  
Bernd A. Berg ◽  
Marcia O. Fenley ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Replica Exchange ◽  
Exchange Method ◽  
Hamiltonian Replica Exchange ◽  
Efficient Sampling ◽  
Dynamics Simulations ◽  
Replica Exchange Method

scholarly journals Hamiltonian and Distance Replica Exchange Method Studies of Met-Enkephalin

2007 ◽  
Vol 111 (42) ◽  
pp. 12310-12321 ◽  
Author(s):  
Li Su ◽  
Robert I. Cukier
Keyword(s):  
Replica Exchange ◽  
Exchange Method ◽  
Replica Exchange Method

scholarly journals Replica-exchange method using Tsallis statistics for protein folding

2000 ◽  
Vol 40 (supplement) ◽  
pp. S165
Author(s):  
M. Ito ◽  
Y. Okamoto
Keyword(s):  
Protein Folding ◽  
Replica Exchange ◽  
Exchange Method ◽  
Tsallis Statistics ◽  
Replica Exchange Method

A convective replica-exchange method for sampling new energy basins

2012 ◽  
Vol 34 (2) ◽  
pp. 132-140 ◽  
Author(s):  
Yannick G. Spill ◽  
Guillaume Bouvier ◽  
Michael Nilges
Keyword(s):  
Replica Exchange ◽  
Exchange Method ◽  
New Energy ◽  
Replica Exchange Method

scholarly journals Replica-Permutation Method with the Suwa–Todo Algorithm beyond the Replica-Exchange Method

2012 ◽  
Vol 9 (1) ◽  
pp. 570-581 ◽  
Author(s):  
Satoru G. Itoh ◽  
Hisashi Okumura
Keyword(s):  
Replica Exchange ◽  
Exchange Method ◽  
Replica Exchange Method
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