De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra

2014 ◽  
Vol 13 (7) ◽  
pp. 3241-3248 ◽  
Author(s):  
Xiaowen Liu ◽  
Lennard J. M. Dekker ◽  
Si Wu ◽  
Martijn M. Vanduijn ◽  
Theo M. Luider ◽  
...  
Keyword(s):  
Mass Spectra ◽  
De Novo ◽  
Protein Sequencing ◽  
Tandem Mass ◽  
Top Down ◽  
Bottom Up ◽  
Tandem Mass Spectra

scholarly journals De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods

PROTEOMICS ◽  
2017 ◽  
Vol 17 (23-24) ◽  
pp. 1600321 ◽  
Author(s):  
Kira Vyatkina ◽  
Lennard J. M. Dekker ◽  
Si Wu ◽  
Martijn M. VanDuijn ◽  
Xiaowen Liu ◽  
...  
Keyword(s):  
High Resolution ◽  
Mass Spectra ◽  
De Novo ◽  
De Novo Sequencing ◽  
Tandem Mass ◽  
Top Down ◽  
Bottom Up ◽  
Tandem Mass Spectra

De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra

2015 ◽  
Vol 14 (11) ◽  
pp. 4450-4462 ◽  
Author(s):  
Kira Vyatkina ◽  
Si Wu ◽  
Lennard J. M. Dekker ◽  
Martijn M. VanDuijn ◽  
Xiaowen Liu ◽  
...  
Keyword(s):  
Mass Spectra ◽  
De Novo ◽  
De Novo Sequencing ◽  
Tandem Mass ◽  
Top Down ◽  
Tandem Mass Spectra

scholarly journals Spectral probabilities of top-down tandem mass spectra

BMC Genomics ◽  
2014 ◽  
Vol 15 (S1) ◽  
Author(s):  
Xiaowen Liu ◽  
Matthew W Segar ◽  
Shuai Cheng Li ◽  
Sangtae Kim
Keyword(s):  
Mass Spectra ◽  
Tandem Mass ◽  
Top Down ◽  
Tandem Mass Spectra

Shotgun Protein Sequencing by Tandem Mass Spectra Assembly

2004 ◽  
Vol 76 (24) ◽  
pp. 7221-7233 ◽  
Author(s):  
Nuno Bandeira ◽  
Haixu Tang ◽  
Vineet Bafna ◽  
Pavel Pevzner
Keyword(s):  
Mass Spectra ◽  
Protein Sequencing ◽  
Tandem Mass ◽  
Tandem Mass Spectra

De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning

2006 ◽  
Vol 13 (2) ◽  
pp. 364-378 ◽  
Author(s):  
Marshall Bern ◽  
David Goldberg
Keyword(s):  
Graph Partitioning ◽  
Mass Spectra ◽  
De Novo ◽  
Tandem Mass ◽  
Tandem Mass Spectra ◽  
Spectral Graph ◽  
Spectral Graph Partitioning

Quantum Chemical Fragment Precursor Tests: Accelerating de novo annotation of tandem mass spectra

2017 ◽  
Vol 995 ◽  
pp. 52-64 ◽  
Author(s):  
Benjamin G. Janesko ◽  
Li Li ◽  
Rodger Mensing
Keyword(s):  
Quantum Chemical ◽  
Mass Spectra ◽  
De Novo ◽  
Tandem Mass ◽  
Tandem Mass Spectra
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