scholarly journals Structural basis for high specificity of octopine binding in the plant pathogen Agrobacterium tumefaciens

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Armelle Vigouroux ◽  
Abbas El Sahili ◽  
Julien Lang ◽  
Magali Aumont-Nicaise ◽  
Yves Dessaux ◽  
...  
2017 ◽  
Vol 11 (9) ◽  
pp. e0005932 ◽  
Author(s):  
Joar Pinto ◽  
Steven Odongo ◽  
Felicity Lee ◽  
Vaiva Gaspariunaite ◽  
Serge Muyldermans ◽  
...  

2004 ◽  
Vol 186 (14) ◽  
pp. 4492-4501 ◽  
Author(s):  
Thomas Danhorn ◽  
Morten Hentzer ◽  
Michael Givskov ◽  
Matthew R. Parsek ◽  
Clay Fuqua

ABSTRACT The plant pathogen Agrobacterium tumefaciens forms architecturally complex biofilms on inert surfaces. Adherence of A. tumefaciens C58 was significantly enhanced under phosphate limitation compared to phosphate-replete conditions, despite slower overall growth under low-phosphate conditions. Replacement of Pi with sn-glycerol-3-phosphate and 2-aminoethylphosphonate yielded similar results. The increase in surface interactions under phosphate limitation was observed in both static culture and continuous-culture flow cells. Statistical analysis of confocal micrographs obtained from the flow cell biofilms revealed that phosphate limitation increased both the overall attached biomass and the surface coverage, whereas the maximum thickness of the biofilm was not affected. Functions encoded on the two large plasmids of A. tumefaciens C58, pTiC58 and pAtC58, were not required for the observed phosphate effect. The phosphate concentration at which increased attachment was observed triggered the phosphate limitation response, controlled in many bacteria by the two-component regulatory system PhoR-PhoB. The A. tumefaciens phoB and phoR orthologues could only be disrupted in the presence of plasmid-borne copies of the genes, suggesting that this regulatory system might be essential. Expression of the A. tumefaciens phoB gene from a tightly regulated inducible promoter, however, correlated with the amount of biofilm under both phosphate-limiting and nonlimiting conditions, demonstrating that components of the Pho regulon influence A. tumefaciens surface interactions.


RNA Biology ◽  
2012 ◽  
Vol 9 (4) ◽  
pp. 446-457 ◽  
Author(s):  
Ina Wilms ◽  
Aaron Overlöper ◽  
Minou Nowrousian ◽  
Cynthia M. Sharma ◽  
Franz Narberhaus

2007 ◽  
Vol 190 (3) ◽  
pp. 1108-1117 ◽  
Author(s):  
Taisuke Wakamatsu ◽  
Noriko Nakagawa ◽  
Seiki Kuramitsu ◽  
Ryoji Masui

ABSTRACT ADP-ribose (ADPR) is one of the main substrates of Nudix proteins. Among the eight Nudix proteins of Thermus thermophilus HB8, we previously determined the crystal structure of Ndx4, an ADPR pyrophosphatase (ADPRase). In this study we show that Ndx2 of T. thermophilus also preferentially hydrolyzes ADPR and flavin adenine dinucleotide and have determined its crystal structure. We have determined the structures of Ndx2 alone and in complex with Mg2+, with Mg2+ and AMP, and with Mg2+ and a nonhydrolyzable ADPR analogue. Although Ndx2 recognizes the AMP moiety in a manner similar to those for other ADPRases, it recognizes the terminal ribose in a distinct manner. The residues responsible for the recognition of the substrate in Ndx2 are not conserved among ADPRases. This may reflect the diversity in substrate specificity among ADPRases. Based on these results, we propose the classification of ADPRases into two types: ADPRase-I enzymes, which exhibit high specificity for ADPR; and ADPRase-II enzymes, which exhibit low specificity for ADPR. In the active site of the ternary complexes, three Mg2+ ions are coordinated to the side chains of conserved glutamate residues and water molecules. Substitution of Glu90 and Glu94 with glutamine suggests that these residues are essential for catalysis. These results suggest that ADPRase-I and ADPRase-II enzymes have nearly identical catalytic mechanisms but different mechanisms of substrate recognition.


2015 ◽  
Vol 467 (1) ◽  
pp. 171-177 ◽  
Author(s):  
Ricardo B. Mariutti ◽  
Tatiana A.C.B. Souza ◽  
Anwar Ullah ◽  
Icaro P. Caruso ◽  
Fábio R. de Moraes ◽  
...  

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