Large-scale QM/MM calculations of the CaMn4O5 cluster in the S3 state of the oxygen evolving complex of photosystem II. Comparison between water-inserted and no water-inserted structures

2017 ◽  
Vol 198 ◽  
pp. 83-106 ◽  
Author(s):  
Mitsuo Shoji ◽  
Hiroshi Isobe ◽  
Takahito Nakajima ◽  
Yasuteru Shigeta ◽  
Michihiro Suga ◽  
...  

Large-scale QM/MM calculations were performed to elucidate an optimized geometrical structure of a CaMn4O5 cluster with and without water insertion in the S3 state of the oxygen evolving complex (OEC) of photosystem II (PSII). The left (L)-opened structure was found to be stable under the assumption of no hydroxide anion insertion in the S3 state, whereas the right (R)-opened structure became more stable if one water molecule is inserted to the Mn4Ca cluster. The optimized Mna(4)–Mnd(1) distance determined by QM/MM was about 5.0 Å for the S3 structure without an inserted hydroxide anion, but this is elongated by 0.2–0.3 Å after insertion. These computational results are discussed in relation to the possible mechanisms of O–O bond formation in water oxidation by the OEC of PSII.

2015 ◽  
Vol 112 (13) ◽  
pp. 3979-3984 ◽  
Author(s):  
Xichen Li ◽  
Per E. M. Siegbahn ◽  
Ulf Ryde

Most of the main features of water oxidation in photosystem II are now well understood, including the mechanism for O–O bond formation. For the intermediate S2 and S3 structures there is also nearly complete agreement between quantum chemical modeling and experiments. Given the present high degree of consensus for these structures, it is of high interest to go back to previous suggestions concerning what happens in the S2–S3 transition. Analyses of extended X-ray adsorption fine structure (EXAFS) experiments have indicated relatively large structural changes in this transition, with changes of distances sometimes larger than 0.3 Å and a change of topology. In contrast, our previous density functional theory (DFT)(B3LYP) calculations on a cluster model showed very small changes, less than 0.1 Å. It is here found that the DFT structures are also consistent with the EXAFS spectra for the S2 and S3 states within normal errors of DFT. The analysis suggests that there are severe problems in interpreting EXAFS spectra for these complicated systems.


2014 ◽  
Vol 16 (24) ◽  
pp. 11911-11923 ◽  
Author(s):  
H. Isobe ◽  
M. Shoji ◽  
S. Yamanaka ◽  
H. Mino ◽  
Y. Umena ◽  
...  

Broken-symmetry UB3LYP calculations have elucidated structural symmetry-breaking in the S1 and S3 states of the oxygen evolution complex (OEC) of photosystem II (PSII), providing the right (RO)- and left (LO)-opened structures.


2004 ◽  
Vol 1655 ◽  
pp. 158-171 ◽  
Author(s):  
R.David Britt ◽  
Kristy A Campbell ◽  
Jeffrey M Peloquin ◽  
M.Lane Gilchrist ◽  
Constantino P Aznar ◽  
...  

Science ◽  
2014 ◽  
Vol 345 (6198) ◽  
pp. 804-808 ◽  
Author(s):  
N. Cox ◽  
M. Retegan ◽  
F. Neese ◽  
D. A. Pantazis ◽  
A. Boussac ◽  
...  

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