exafs spectra
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2022 ◽  
Vol 64 (3) ◽  
pp. 345
Author(s):  
И.А. Случинская ◽  
А.И. Лебедев

The local environment and oxidation state of the Fe impurity in strontium titanate are studied using XAFS spectroscopy. The influence of annealing temperature and deviation from stoichiometry on the possibility of incorporation of the impurity into the A and B sites of the perovskite structure is studied. The results obtained from the X-ray diffraction, XANES spectra, and EXAFS spectra suggest that at high annealing temperature the iron atoms, at least partially (up to 30%), enter the A sites in SrTiO3. The obtained results agree with results of first-principles calculations, according to which the iron at the A site exhibits strong off-centering (the displacement of ~1 Angstrom), similar to that previously established in SrTiO3 samples doped with Mn and Co.


Author(s):  
Alexander V. Shapeev ◽  
Dmitry Bocharov ◽  
Alexei Kuzmin

2021 ◽  
Vol 770 ◽  
pp. 145334
Author(s):  
Katja Schmeide ◽  
André Rossberg ◽  
Frank Bok ◽  
Salim Shams Aldin Azzam ◽  
Stephan Weiss ◽  
...  

Molecules ◽  
2020 ◽  
Vol 25 (22) ◽  
pp. 5250
Author(s):  
Sergio Pérez-Conesa ◽  
José M. Martínez ◽  
Rafael R. Pappalardo ◽  
Enrique Sánchez Marcos

EXAFS spectroscopy is one of the most used techniques to solve the structure of actinoid solutions. In this work a systematic analysis of the EXAFS spectra of four actinyl cations, [UO2]2+, [NpO2]2+, [NpO2]+ and [PuO2]2+ has been carried out by comparing experimental results with theoretical spectra. These were obtained by averaging individual contributions from snapshots taken from classical Molecular Dynamics simulations which employed a recently developed [AnO2]2+/+ –H2O force field based on the hydrated ion model using a quantum-mechanical (B3LYP) potential energy surface. Analysis of the complex EXAFS signal shows that both An-Oyl and An-OW single scattering paths as well as multiple scattering ones involving [AnO2]+/2+ molecular cation and first-shell water molecules are mixed up all together to produce a very complex signal. Simulated EXAFS from the B3LYP force field are in reasonable agreement for some of the cases studied, although the k= 6–8 Å−1 region is hard to be reproduced theoretically. Except uranyl, all studied actinyls are open-shell electron configurations, therefore it has been investigated how simulated EXAFS spectra are affected by minute changes of An-O bond distances produced by the inclusion of static and dynamic electron correlation in the quantum mechanical calculations. A [NpO2]+−H2O force field based on a NEVPT2 potential energy surface has been developed. The small structural changes incorporated by the electron correlation on the actinyl aqua ion geometry, typically smaller than 0.07 Å, leads to improve the simulated spectrum with respect to that obtained from the B3LYP force field. For the other open-shell actinyls, [NpO2]2+ and [PuO2]2+, a simplified strategy has been adopted to improve the simulated EXAFS spectrum. It is computed taking as reference structure the NEVPT2 optimized geometry and including the DW factors of their corresponding MD simulations employing the B3LYP force field. A better agreement between the experimental and the simulated EXAFS spectra is found, confirming the a priori guess that the inclusion of dynamic and static correlation refine the structural description of the open-shell actinyl aqua ions.


2020 ◽  
Vol 175 ◽  
pp. 108100 ◽  
Author(s):  
Dmitry Bocharov ◽  
Andris Anspoks ◽  
Janis Timoshenko ◽  
Aleksandr Kalinko ◽  
Matthias Krack ◽  
...  

Minerals ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 640 ◽  
Author(s):  
Nikolay D. Trofimov ◽  
Alexander L. Trigub ◽  
Boris R. Tagirov ◽  
Olga N. Filimonova ◽  
Polina V. Evstigneeva ◽  
...  

The oxidation state and local atomic environment of admixtures of In, Cu, and Ag in synthetic sphalerite crystals were determined by X-ray absorption spectroscopy (XAS). The sphalerite crystals doped with In, Cu, Ag, In–Cu, and In–Ag were synthesized utilizing gas transport, salt flux, and dry synthesis techniques. Oxidation states of dopants were determined using X-ray absorption near edge structure (XANES) technique. The local atomic structure was studied by X-ray absorption fine structure spectroscopy (EXAFS). The spectra were recorded at Zn, In, Ag, and Cu K-edges. In all studied samples, In was in the 3+ oxidation state and replaced Zn in the structure of sphalerite, which occurs with the expansion of the nearest coordination shells due to the large In ionic radius. In the presence of In, the oxidation state of Cu and Ag is 1+, and both metals can form an isomorphous solid solution where they substitute for Zn according to the coupled substitution scheme 2Zn2+ ↔ Me+ + In3+. Moreover, Ag K-edges EXAFS spectra fitting, combined with the results obtained for In- and Au-bearing sphalerite shows that the Me-S distances in the first coordination shell in the solid solution state are correlated with the ionic radii and increase in the order of Cu < Ag < Au. The distortion of the atomic structure increases in the same order. The distant (second and third) coordination shells of Cu and Ag in sphalerite are split into two subshells, and the splitting is more pronounced for Ag. Analysis of the EXAFS spectra, coupled with the results of DFT (Density Function Theory) simulations, showed that the In–In and Me+–In3+ clustering is absent when the metals are present in the sphalerite solid solution. Therefore, all studied admixtures (In, Cu, Ag), as well as Au, are randomly distributed in the matrix of sphalerite, where the concentration of the elements in the “invisible” form can reach a few tens wt.%.


2020 ◽  
Vol 855 ◽  
pp. 166-171
Author(s):  
Retno Asih ◽  
Rosana Martina Dhari ◽  
Malik Anjelh Baqiya ◽  
Fahmi Astuti ◽  
Heru Harsono ◽  
...  

Effects of Mn-substitution on magnetic properties of Zn1-xMnxO (MZO) nanoparticles with x= 0.00, 0.03, 0.05 and 0.07 have been investigated along with their local structure. Study on Mn K-edge XANES spectra of MZO reveals that the oxidation state increases by Mn-substitution, which further implies that MZO exhibits a mixed valence state of Mn3+/Mn4+. The local structure analysis on Mn K-edge EXAFS spectra shows that the coordination number (CN) of Mn reduces by increasing Mn concentration, thus the amount of oxygen vacancy (VO) increases by Mn-substitution. Interestingly, the magnetization of MZO also tend to increase as the Mn concentration increases. The M(H) curves exhibit a linear (paramagnetic) behavior, showing no evidence of room-temperature ferromagnetism. Our results show that magnetism of MZO is related to the correlation between Mn magnetic moment and VO.


Life ◽  
2020 ◽  
Vol 10 (6) ◽  
pp. 93
Author(s):  
Ronald A. Glabonjat ◽  
Jodi S. Blum ◽  
Laurence G. Miller ◽  
Samuel M. Webb ◽  
John F. Stolz ◽  
...  

Primary production in Mono Lake, a hypersaline soda lake rich in dissolved inorganic arsenic, is dominated by Picocystis strain ML. We set out to determine if this photoautotrophic picoplankter could metabolize inorganic arsenic and in doing so form unusual arsenolipids (e.g., arsenic bound to 2-O-methyl ribosides) as reported in other saline ecosystems and by halophilic algae. We cultivated Picocystis strain ML on a seawater-based medium with either low (37 µM) or high (1000 µM) phosphate in the presence of arsenite (400 µM), arsenate (800 µM), or without arsenic additions (ca 0.025 µM). Cultivars formed a variety of organoarsenic compounds, including a phytyl 2-O-methyl arsenosugar, depending upon the cultivation conditions and arsenic exposure. When the cells were grown at low P, the organoarsenicals they produced when exposed to both arsenite and arsenate were primarily arsenolipids (~88%) with only a modest content of water-soluble organoarsenic compounds (e.g., arsenosugars). When grown at high P, sequestration shifted to primarily water-soluble, simple methylated arsenicals such as dimethylarsinate; arsenolipids still constituted ~32% of organoarsenic incorporated into cells exposed to arsenate but < 1% when exposed to arsenite. Curiously, Picocystis strain ML grown at low P and exposed to arsenate sequestered huge amounts of arsenic into the cells accounting for 13.3% of the dry biomass; cells grown at low P and arsenite exposure sequestered much lower amounts, equivalent to 0.35% of dry biomass. Extraction of a resistant phase with trifluoroacetate recovered most of the sequestered arsenic in the form of arsenate. Uptake of arsenate into low P-cultivated cells was confirmed by X-ray fluorescence, while XANES/EXAFS spectra indicated the sequestered arsenic was retained as an inorganic iron precipitate, similar to scorodite, rather than as an As-containing macromolecule. Samples from Mono Lake demonstrated the presence of a wide variety of organoarsenic compounds, including arsenosugar phospholipids, most prevalent in zooplankton (Artemia) and phytoplankton samples, with much lower amounts detected in the bottom sediments. These observations suggest a trophic transfer of organoarsenicals from the phytoplankton (Picocystis) to the zooplankton (Artemia) community, with efficient bacterial mineralization of any lysis-released organoarsenicals back to inorganic oxyanions before they sink to the sediments.


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