scholarly journals Co‐existence of somatic hypermutation and gene conversion in hypervariable regions of single Igκ clones

Immunology ◽  
1998 ◽  
Vol 95 (2) ◽  
pp. 291-301 ◽  
Author(s):  
LIU ◽  
WOLF
PLoS ONE ◽  
2016 ◽  
Vol 11 (2) ◽  
pp. e0149146 ◽  
Author(s):  
Alan M. Williams ◽  
Yaakov Maman ◽  
Jukka Alinikula ◽  
David G. Schatz

1984 ◽  
Vol 160 (4) ◽  
pp. 1184-1194 ◽  
Author(s):  
L Mengle-Gaw ◽  
S Conner ◽  
H O McDevitt ◽  
C G Fathman

The experiments presented in this study define the molecular basis of the bm 12 mutation. Initial characterization of an alloreactive T cell clone, 4.1.4, showed this clone to recognize an allodeterminant present on the E beta b and A beta bm12 chains, but not on the bm 12 parent A beta b chain. To define the extent of sequence shared between the I-E beta product and the mutant I-A beta product, we isolated a cDNA clone of the E beta b gene and determined its nucleotide sequence. Comparison of the nucleotide sequences of E beta b, A beta b, and A beta bm12 shows the the A beta bm12 gene to be identical to the E beta b gene in the region where it differs from its A beta b parent. We predict that the bm 12 mutation arose by gene conversion of this region, which spans 14 nucleotides between amino acid residues 67-71 of the mature A beta chain, from the E beta b locus to the corresponding position at the A beta b locus. Recognition of this region, which spans one of the previously defined E beta allelic "hypervariable" regions, by an alloreactive T cell clone provides the first direct evidence of the functional importance of these hypervariable regions in T cell stimulation. The identification of a gene conversion event involving one of these allelic variable regions implicates conversion as a mechanism that acts on class II beta genes to create sequence diversity in regions of Ia molecules that interact with foreign antigen or a T cell receptor, regions where protein sequence polymorphism would presumably be selected for by the expanded ability it affords the organism to mount effective immune responses against a wider variety of foreign antigens.


DNA Repair ◽  
2008 ◽  
Vol 7 (2) ◽  
pp. 253-266 ◽  
Author(s):  
Simonne Longerich ◽  
Brian J. Orelli ◽  
Richard W. Martin ◽  
Douglas K. Bishop ◽  
Ursula Storb

2003 ◽  
Vol 197 (10) ◽  
pp. 1291-1296 ◽  
Author(s):  
Sarah K. Dickerson ◽  
Eleonora Market ◽  
Eva Besmer ◽  
F. Nina Papavasiliou

Activation-induced deaminase (AID) is a protein indispensable for the diversification of immunoglobulin (Ig) genes by somatic hypermutation (SHM), class switch recombination (CSR), and gene conversion. To date, the precise role of AID in these processes has not been determined. Here we demonstrate that purified, tetrameric AID can deaminate cytidine residues in DNA, but not in RNA. Furthermore, we show that AID will bind and deaminate only single-stranded DNA, which implies a direct, functional link between hypermutation and transcription. Finally, AID does not target mutational hotspots, thus mutational targeting to specific residues must be attributed to different factors.


2006 ◽  
Vol 203 (13) ◽  
pp. 2919-2928 ◽  
Author(s):  
Shu Yuan Yang ◽  
Sebastian D. Fugmann ◽  
David G. Schatz

It is thought that gene conversion (GCV) and somatic hypermutation (SHM) of immunoglobulin (Ig) genes occur in two steps: the generation of uracils in DNA by activation-induced cytidine deaminase, followed by their subsequent repair by various DNA repair pathways to generate sequence-diversified products. It is not known how either of the two steps is targeted specifically to Ig loci. Because of the tight link between transcription and SHM, we have investigated the role of endogenous Ig light chain (IgL) transcriptional control elements in GCV/SHM in the chicken B cell line DT40. Promoter substitution experiments led to identification of a strong RNA polymerase II promoter incapable of supporting efficient GCV/SHM. This surprising finding indicates that high levels of transcription are not sufficient for robust GCV/SHM in Ig loci. Deletion of the IgL enhancer in a context in which high-level transcription was not compromised showed that the enhancer is not necessary for GCV/SHM. Our results indicate that cis-acting elements are important for Ig gene diversification, and we propose that targeting specificity is achieved through the combined action of several Ig locus elements that include the promoter.


Nature ◽  
2001 ◽  
Vol 412 (6850) ◽  
pp. 921-926 ◽  
Author(s):  
Julian E. Sale ◽  
Daniella M. Calandrini ◽  
Minoru Takata ◽  
Shunichi Takeda ◽  
Michael S. Neuberger

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