scholarly journals Molecular phylogenetic analysis of Indonesia Solanaceae based on DNA sequences of internal transcribed spacer region

2016 ◽  
Author(s):  
Topik Hidayat ◽  
Didik Priyandoko ◽  
Dina Karina Islami ◽  
Putri Yunitha Wardiny
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Molecular Phylogenetic Analysis ◽  
Internal Transcribed Spacer Region ◽  
Molecular Phylogenetic

Infundibulicybe macrospora sp. nov., a new and noteworthy species from Himalayan moist temperate forests of Pakistan

Phytotaxa ◽  
2020 ◽  
Vol 452 (4) ◽  
pp. 268-277
Author(s):  
MUHAMMAD ALI ◽  
JUNAID KHAN ◽  
HIRA BASHIR ◽  
ABDUL REHMAN NIAZI ◽  
HASSAN SHER ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Internal Transcribed Spacer ◽  
Temperate Forests ◽  
Its Region ◽  
Molecular Phylogenetic Analysis ◽  
Molecular Phylogenetic ◽  
A New Species ◽  
Reddish Orange ◽  
Light Orange

Infundibulicybe macrospora, a new species, is described and illustrated from the Himalayan moist temperate forests of Pakistan. The new species can be differentiated from close allies by its reddish orange to light orange pileus, whitish lamellae and stipe, and larger and broader basidiospores. The new species is also supported by molecular phylogenetic analysis inferred from internal transcribed spacer (ITS) region.

Molecular Phylogenetic Analysis of Archaeal Intron-Containing Genes Coding for rRNA Obtained from a Deep-Subsurface Geothermal Water Pool

1999 ◽  
Vol 65 (12) ◽  
pp. 5586-5589 ◽  
Author(s):  
Ken Takai ◽  
Koki Horikoshi
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Sequences ◽  
Sequence Similarity ◽  
Homing Endonuclease ◽  
Open Reading Frames ◽  
Molecular Phylogenetic Analysis ◽  
Homing Endonucleases ◽  
Deep Subsurface ◽  
Molecular Phylogenetic ◽  
Sequence Similarity Analysis

ABSTRACT Molecular phylogenetic analysis of a naturally occurring microbial community in a deep-subsurface geothermal environment indicated that the phylogenetic diversity of the microbial population in the environment was extremely limited and that only hyperthermophilic archaeal members closely related to Pyrobaculum were present. All archaeal ribosomal DNA sequences contained intron-like sequences, some of which had open reading frames with repeated homing-endonuclease motifs. The sequence similarity analysis and the phylogenetic analysis of these homing endonucleases suggested the possible phylogenetic relationship among archaeal rRNA-encoded homing endonucleases.

Ottelia guanyangensis (Hydrocharitaceae), a new species from southwestern China

Phytotaxa ◽  
2018 ◽  
Vol 361 (3) ◽  
pp. 294 ◽  
Author(s):  
ZHI-ZHONG LI ◽  
KUO LIAO ◽  
CHUN-YU ZOU ◽  
YAN LIU ◽  
GUANG-WAN HU ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Aquatic Plant ◽  
Nuclear Dna ◽  
Southwestern China ◽  
Molecular Phylogenetic ◽  
Chloroplast Dna Sequences ◽  
A New Species

Ottelia guanyangensis (Hydrocharitaceae), a new species from southwestern China, is described and illustrated. This aquatic plant is a perennial, submersed herb with bisexual flowers and a hexagonal-cylindric fruit. It is related to O. acuminata var. songmingensis and O. balansae but differs from these two taxa by its bisexual flowers, spathe with 2–5 flowers, trinerved leaf with obvious cross veins, and a winged, hexagonal-cylindric fruit. Molecular phylogenetic analysis based on nuclear DNA internal transcribed spacer (ITS) sequences and three chloroplast DNA sequences (rbcL, trnK5’ intron and trnS-trnG) resolves O. guanyangensis as a distinct clade, which further justifies its recognition as a new species.

Three new combinations of Butyriboletus (Boletaceae)

Phytotaxa ◽  
2015 ◽  
Vol 234 (1) ◽  
pp. 51 ◽  
Author(s):  
Kuan Zhao ◽  
Gang Wu ◽  
Roy Halling ◽  
Zhu L. Yang
Keyword(s):  
Phylogenetic Analysis ◽  
North America ◽  
Dna Sequences ◽  
Morphological Features ◽  
Molecular Phylogenetic Analysis ◽  
New Combinations ◽  
Gene Markers ◽  
Molecular Phylogenetic

Boletus peckii, B. pulchriceps and B. roseopurpureus, which were originally described from North America, are characterized by a yellow tube layer that often bruises blue, a yellow reticulated stipe especially at the apex, firm yellow-tinged flesh that often turns blue when exposed, smooth spores and an interwoven trichodermic pileipellis. The phylogenetic positions of the three species are inferred by molecular phylogenetic analysis based on DNA sequences of four gene markers (ITS, nrLSU, tef1-α and rpb1). Both morphological features and molecular phylogenetic evidence indicate that these three boletes belong to Butyriboletus, and thus, should be transferred to the genus.

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