scholarly journals Identifying ‘useful’ fitness models: balancing the benefits of added complexity with realistic data requirements in models of individual plant fitness

2020 ◽  
Author(s):  
Trace E. Martyn ◽  
Daniel B. Stouffer ◽  
Oscar Godoy ◽  
Ignasi Bartomeus ◽  
Abigail Pastore ◽  
...  

Oikos ◽  
1978 ◽  
Vol 31 (3) ◽  
pp. 299 ◽  
Author(s):  
Nils Chr. Stenseth


Author(s):  
Ragavendran Abbai ◽  
Vikas K. Singh ◽  
Rod J. Snowdon ◽  
Arvind Kumar ◽  
Thorsten Schnurbusch

Crop domestication and breeding considerably increased productivity over centuries, but simultaneously involved unconscious selection against ‘selfish plant behavior’. Paradoxically, modern-day crop breeding largely enhances individual plant-fitness. As agriculture relies on community performance, embracing an “Agroecological Genetics and Genomics” viewpoint might maximize communal yield by matching crop genotypes to target environments.



2020 ◽  
Vol 8 (6) ◽  
pp. 872
Author(s):  
Soon-Jae Lee ◽  
Mengxuan Kong ◽  
Marc St-Arnaud ◽  
Mohamed Hijri

Arbuscular mycorrhizal fungi (AMF) have been shown to play an important role in increasing plant fitness in harsh conditions. Therefore, AMF are currently considered to be effective partners in phytoremediation. However, AMF communities in high levels of petroleum pollution are still poorly studied. We investigated the community structures of AMF in roots and rhizospheric soils of two plant species, Eleocharis elliptica and Populus tremuloides, growing spontaneously in high petroleum-contaminated sedimentation basins of a former petrochemical plant (91,000 μg/Kg of C10–C50 was recorded in a basin which is 26-fold higher than the threshold of polluted soil in Quebec, Canada). We used a PCR cloning, and sequencing approach, targeting the 18S rRNA gene to identify AMF taxa. The high concentration of petroleum-contamination largely influenced the AMF diversity, which resulted in less than five AMF operational taxonomical units (OTUs) per individual plant at all sites. The OTUs detected belong mainly to the Glomerales, with some from the Diversisporales and Paraglomerales, which were previously reported in high concentrations of metal contamination. Interestingly, we found a strong phylogenetic signal in OTU associations with host plant species identity, biotopes (roots or soils), and contamination concentrations (lowest, intermediate and highest). The genus Rhizophagus was the most dominant taxon representing 74.4% of all sequences analyzed in this study and showed clear association with the highest contamination level. The clear association of Rhizophagus with high contamination levels suggests the importance of the genus for the use of AMF in bioremediation, as well as for the survey of key AMF genes related to petroleum hydrocarbon resistance. By favoring plant fitness and mediating its soil microbial interactions, Rhizophagus spp. could enhance petroleum hydrocarbon pollutant degradation by both plants and their microbiota in contaminated sites.





1999 ◽  
Vol 38 (04/05) ◽  
pp. 339-344 ◽  
Author(s):  
J. van der Lei ◽  
B. M. Th. Mosseveld ◽  
M. A. M. van Wijk ◽  
P. D. van der Linden ◽  
M. C. J. M. Sturkenboom ◽  
...  

AbstractResearchers claim that data in electronic patient records can be used for a variety of purposes including individual patient care, management, and resource planning for scientific research. Our objective in the project Integrated Primary Care Information (IPCI) was to assess whether the electronic patient records of Dutch general practitioners contain sufficient data to perform studies in the area of postmarketing surveillance studies. We determined the data requirements for postmarketing surveil-lance studies, implemented additional software in the electronic patient records of the general practitioner, developed an organization to monitor the use of data, and performed validation studies to test the quality of the data. Analysis of the data requirements showed that additional software had to be installed to collect data that is not recorded in routine practice. To avoid having to obtain informed consent from each enrolled patient, we developed IPCI as a semianonymous system: both patients and participating general practitioners are anonymous for the researchers. Under specific circumstances, the researcher can contact indirectly (through a trusted third party) the physician that made the data available. Only the treating general practitioner is able to decode the identity of his patients. A Board of Supervisors predominantly consisting of participating general practitioners monitors the use of data. Validation studies show the data can be used for postmarketing surveillance. With additional software to collect data not normally recorded in routine practice, data from electronic patient record of general practitioners can be used for postmarketing surveillance.



2017 ◽  
Vol 23 (1) ◽  
Author(s):  
A. B. SAGADE

The study of the effect of three well known mutagens, ethyl methane sulphonate (EMS), methyl methane sulphonate (MMS) and gamma rays (GR) on the yield contributing traits of the urdbean variety TPU-4 were carried out in the M3 generation. Effect of selected mutagenic treatments/doses of EMS (0.02, 0.03 and 0.04 M), MMS (0.0025, 0.05 and 0.01 M) and (GR) (30, 40 and 50 KR) on different yield contributing traits like plant height, plant spread, number of pods per plant, pod length, number of seeds per pod, seed yield per plant and 100 seed weight were analyzed in the M3 populations of the variety TPU-4. Seeds of M2 plants and control were harvested separately and sown to raise M3 population.. Genetic variabilty in the mutagen administered M3 progeny of the urdbean variety TPU-4 was analyzed by employing statistical methods. Data on mean values and shift in the mean of seven quantitative traits was evaluated on individual plant basis. The experimental findings revealed that concentrations / dose of the all these mutagens showed inhibitory effect on plant height, number of pods per plant, pod length and number of seeds per pod. Lower concentrations of mutagens exerted a promotory effect on plant spread, 100 seed weight and seed yield per plant while higher concentrations of these mutagens inhibited them to different extent.



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