iRPIS-PseNNC: identifying RNA-protein interaction sites by incorporating the position-specific dinucleotide propensity into ensemble random forest approach

IOP Conference Series Earth and Environmental Science ◽

10.1088/1755-1315/69/1/012056 ◽

2017 ◽

Vol 69 ◽

pp. 012056

Author(s):

Long Li ◽

Guojin Chen ◽

Tingdu Jin

Keyword(s):

Random Forest ◽

Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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Protein-Protein Interaction Sites Prediction Based on an Under-Sampling Strategy and Random Forest Algorithm

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2021.3123269 ◽

2021 ◽

pp. 1-1

Author(s):

Minjie Li ◽

Ziheng Wu ◽

Wenyan Wang ◽

Kun Lu ◽

Jun Zhang ◽

...

Keyword(s):

Random Forest ◽

Protein Interaction ◽

Sampling Strategy ◽

Random Forest Algorithm ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Under Sampling ◽

Protein Interaction Sites

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Prediction of Protein-Protein Interaction Sites by Random Forest Algorithm with mRMR and IFS

PLoS ONE ◽

10.1371/journal.pone.0043927 ◽

2012 ◽

Vol 7 (8) ◽

pp. e43927 ◽

Author(s):

Bi-Qing Li ◽

Kai-Yan Feng ◽

Lei Chen ◽

Tao Huang ◽

Yu-Dong Cai

Keyword(s):

Random Forest ◽

Protein Interaction ◽

Random Forest Algorithm ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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Seeing the Trees through the Forest: Sequence-based Homo- and Heteromeric Protein-protein Interaction sites prediction using Random Forest

Bioinformatics ◽

10.1093/bioinformatics/btx005 ◽

2017 ◽

pp. btx005 ◽

Author(s):

Qingzhen Hou ◽

Paul De Geest ◽

Wim F. Vranken ◽

Jaap Heringa ◽

K. Anton Feenstra

Keyword(s):

Random Forest ◽

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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Structure-based prediction of protein-protein interaction sites

10.31274/etd-180810-1200 ◽

2012 ◽

Author(s):

Rafael Armando Jordan

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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PPIs Meta: A Meta-predictor of Protein-Protein Interaction Sites with Weighted Voting Strategy

Current Proteomics ◽

10.2174/1570164614666170306164127 ◽

2017 ◽

Vol 14 (3) ◽

Author(s):

Xiaowei Zhao ◽

Lingling Bao ◽

Xiaosa Zhao ◽

Minghao Yin

Keyword(s):

Protein Interaction ◽

Weighted Voting ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Voting Strategy ◽

Protein Interaction Sites

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2P-243 The prediction of protein-protein interaction sites in sequences using a naive bayes classifier with a kernel density estimation(Bioinformatics:Functional genomics,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s145_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S145

Author(s):

Yoichi Murakami ◽

Kenji Mizuguchi

Keyword(s):

Annual Meeting ◽

Density Estimation ◽

Protein Interaction ◽

Kernel Density Estimation ◽

Kernel Density ◽

Bayes Classifier ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Biophysical Society ◽

Protein Interaction Sites

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STUDIES OF THE MOLECULAR LOCALIZATION OF PROTEIN-PROTEIN INTERACTION SITES IN THE LACTOSE SYNTHASE SYSTEM

Proteins in Biology and Medicine ◽

10.1016/b978-0-12-124580-1.50027-6 ◽

1982 ◽

pp. 379-393

Author(s):

Keith Brew ◽

Sudhir K. Sinha

Keyword(s):

Protein Interaction ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Lactose Synthase ◽

Protein Interaction Sites

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2010/04/30: Protein Prediction: lecture 03-1: Predict protein-interaction sites: Burkhard Rost

SciVee ◽

10.4016/17561.01 ◽

2010 ◽

Author(s):

Burkhard Rost

Keyword(s):

Protein Interaction ◽

Interaction Sites ◽

Protein Prediction ◽

Predict Protein Interaction ◽

Protein Interaction Sites

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Prediction of Protein Interaction Sites Using Mimotope Analysis

Protein-Protein Interactions - Computational and Experimental Tools ◽

10.5772/36694 ◽

2012 ◽

Author(s):

Jian Huang ◽

Beibei Ru ◽

Ping Dai

Keyword(s):

Protein Interaction ◽

Interaction Sites ◽

Protein Interaction Sites

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Sequence-based prediction of protein-protein interaction sites by simplified long short-term memory network

Neurocomputing ◽

10.1016/j.neucom.2019.05.013 ◽

2019 ◽

Vol 357 ◽

pp. 86-100 ◽

Author(s):

Buzhong Zhang ◽

Jinyan Li ◽

Lijun Quan ◽

Yu Chen ◽

Qiang Lü

Keyword(s):

Protein Interaction ◽

Short Term Memory ◽

Term Memory ◽

Protein Protein Interaction ◽

Interaction Sites ◽

Memory Network ◽

Long Short Term Memory ◽

Protein Interaction Sites

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