Inferring gene networks from time series microarray data using dynamic Bayesian networks

S. Y. Kim

doi:10.1093/bib/4.3.228

Inferring gene networks from time series microarray data using dynamic Bayesian networks

Briefings in Bioinformatics ◽

10.1093/bib/4.3.228 ◽

2003 ◽

Vol 4 (3) ◽

pp. 228-235 ◽

Cited By ~ 180

Author(s):

S. Y. Kim

Keyword(s):

Time Series ◽

Bayesian Networks ◽

Microarray Data ◽

Gene Networks ◽

Dynamic Bayesian Networks ◽

Time Series Microarray

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Cancer classification from time series microarray data through regulatory Dynamic Bayesian Networks

Computers in Biology and Medicine ◽

10.1016/j.compbiomed.2019.103577 ◽

2020 ◽

Vol 116 ◽

pp. 103577 ◽

Cited By ~ 2

Author(s):

Konstantina Kourou ◽

George Rigas ◽

Costas Papaloukas ◽

Michalis Mitsis ◽

Dimitrios I. Fotiadis

Keyword(s):

Time Series ◽

Bayesian Networks ◽

Microarray Data ◽

Dynamic Bayesian Networks ◽

Cancer Classification ◽

Time Series Microarray

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Bayesian Inference of Genetic Regulatory Networks from Time Series Microarray Data Using Dynamic Bayesian Networks

Journal of Multimedia ◽

10.4304/jmm.2.3.46-56 ◽

2007 ◽

Vol 2 (3) ◽

Cited By ~ 7

Author(s):

Yufei Huang ◽

Jianyin Wang ◽

Jianqiu Zhang ◽

Maribel Sanchez ◽

Yufeng Wang

Keyword(s):

Time Series ◽

Bayesian Inference ◽

Bayesian Networks ◽

Microarray Data ◽

Regulatory Networks ◽

Dynamic Bayesian Networks ◽

Genetic Regulatory Networks ◽

Time Series Microarray

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Estimating time-dependent gene networks from time series microarray data by dynamic linear models with Markov switching

2005 IEEE Computational Systems Bioinformatics Conference (CSB'05) ◽

10.1109/csb.2005.32 ◽

2005 ◽

Cited By ~ 10

Author(s):

R. Yoshida ◽

S. Imoto ◽

T. Higuchi

Keyword(s):

Time Series ◽

Microarray Data ◽

Gene Networks ◽

Linear Models ◽

Markov Switching ◽

Time Dependent ◽

Dynamic Linear Models ◽

Time Series Microarray

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Granger Causality in Systems Biology: Modeling Gene Networks in Time Series Microarray Data Using Vector Autoregressive Models

Advances in Bioinformatics and Computational Biology - Lecture Notes in Computer Science ◽

10.1007/978-3-642-15060-9_2 ◽

2010 ◽

pp. 13-24 ◽

Cited By ~ 4

Author(s):

André Fujita ◽

Patricia Severino ◽

João Ricardo Sato ◽

Satoru Miyano

Keyword(s):

Time Series ◽

Systems Biology ◽

Granger Causality ◽

Microarray Data ◽

Gene Networks ◽

Autoregressive Models ◽

Vector Autoregressive Models ◽

Vector Autoregressive ◽

Time Series Microarray

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Learning Bayesian Networks by Lamarckian Genetic Algorithm and Its Application to Yeast Cell-Cycle Gene Network Reconstruction from Time-Series Microarray Data

Biologically Inspired Approaches to Advanced Information Technology - Lecture Notes in Computer Science ◽

10.1007/978-3-540-27835-1_5 ◽

2004 ◽

pp. 49-62 ◽

Cited By ~ 2

Author(s):

Sun-Chong Wang ◽

Sai-Ping Li

Keyword(s):

Genetic Algorithm ◽

Cell Cycle ◽

Time Series ◽

Microarray Data ◽

Network Reconstruction ◽

Yeast Cell Cycle ◽

Cell Cycle Gene ◽

Gene Network Reconstruction ◽

Lamarckian Genetic Algorithm ◽

Time Series Microarray

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Adaptive learning of dynamic Bayesian networks with changing structures by detecting geometric structures of time series

Knowledge and Information Systems ◽

10.1007/s10115-008-0175-x ◽

2008 ◽

Vol 17 (2) ◽

pp. 263-263

Author(s):

Kaijun Wang ◽

Junying Zhang ◽

Fengshan Shen ◽

Lingfeng Shi

Keyword(s):

Time Series ◽

Bayesian Networks ◽

Adaptive Learning ◽

Dynamic Bayesian Networks ◽

Geometric Structures

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Retraction Note to: Analyzing time-series microarray data reveals key genes in spinal cord injury

Molecular Biology Reports ◽

10.1007/s11033-015-3906-6 ◽

2015 ◽

Vol 42 (10) ◽

pp. 1485-1485

Author(s):

Xun Xia ◽

Bo Qu ◽

Yuan Ma ◽

Li-bin Yang ◽

Hai-dong Huang ◽

...

Keyword(s):

Spinal Cord ◽

Spinal Cord Injury ◽

Time Series ◽

Microarray Data ◽

Cord Injury ◽

Key Genes ◽

Time Series Microarray

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Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 ◽

10.1145/1854776.1854859 ◽

2010 ◽

Author(s):

Haoni Li ◽

Peng Li ◽

Chaoyang Zhang ◽

Nan Wang ◽

Ping Gong ◽

...

Keyword(s):

Time Series ◽

Performance Evaluation ◽

Bayesian Network ◽

Gene Regulatory Networks ◽

Microarray Data ◽

Regulatory Networks ◽

Dynamic Bayesian Network ◽

Network Approach ◽

Gene Regulatory ◽

Time Series Microarray

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Hierarchical Signature Clustering for Time Series Microarray Data

Advances in Experimental Medicine and Biology - Software Tools and Algorithms for Biological Systems ◽

10.1007/978-1-4419-7046-6_6 ◽

2011 ◽

pp. 57-65 ◽

Cited By ~ 1

Author(s):

Lars Koenig ◽

Eunseog Youn

Keyword(s):

Time Series ◽

Microarray Data ◽

Time Series Microarray

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XMAS: An Experiential Approach for Visualization, Analysis, and Exploration of Time Series Microarray Data

Communications in Computer and Information Science - Bioinformatics Research and Development ◽

10.1007/978-3-540-70600-7_2 ◽

2008 ◽

pp. 16-31 ◽

Cited By ~ 2

Author(s):

Ben Dalziel ◽

Hui Yang ◽

Rahul Singh ◽

Matthew Gormley ◽

Susan Fisher

Keyword(s):

Time Series ◽

Microarray Data ◽

Visualization Analysis ◽

Experiential Approach ◽

Time Series Microarray

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