scholarly journals CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

2008 ◽  
Vol 25 (1) ◽  
pp. 130-131 ◽  
Author(s):  
C. Addo-Quaye ◽  
W. Miller ◽  
M. J. Axtell
Keyword(s):  
Small Rna ◽  
Rna Targets

scholarly journals PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules

2018 ◽  
Author(s):  
Joshua Thody ◽  
Leighton Folkes ◽  
Zahara Medina-Calzada ◽  
Ping Xu ◽  
Tamas Dalmay ◽  
...  
Keyword(s):  
High Throughput ◽  
Small Rna ◽  
Sequencing Data ◽  
Degradome Sequencing ◽  
Rna Targets

scholarly journals StarScan: a web server for scanning small RNA targets from degradome sequencing data

2015 ◽  
Vol 43 (W1) ◽  
pp. W480-W486 ◽  
Author(s):  
Shun Liu ◽  
Jun-Hao Li ◽  
Jie Wu ◽  
Ke-Ren Zhou ◽  
Hui Zhou ◽  
...  
Keyword(s):  
Small Rna ◽  
Web Server ◽  
Sequencing Data ◽  
Degradome Sequencing ◽  
Rna Targets

A small RNA targets pokeweed antiviral protein transcript

2015 ◽  
Vol 156 (3) ◽  
pp. 241-251 ◽  
Author(s):  
Alexander Klenov ◽  
Kira C. M. Neller ◽  
Lydia A. Burns ◽  
Gabriela Krivdova ◽  
Katalin A. Hudak
Keyword(s):  
Small Rna ◽  
Pokeweed Antiviral Protein ◽  
Antiviral Protein ◽  
Rna Targets

Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)

2010 ◽  
Vol 5 (1) ◽  
pp. 67-90 ◽  
Author(s):  
Ming Zhou ◽  
Lianfeng Gu ◽  
Pingchuan Li ◽  
Xianwei Song ◽  
Liya Wei ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Small Rna ◽  
Oryza Sativa L ◽  
Degradome Sequencing ◽  
Rna Targets

scholarly journals CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains

2014 ◽  
Vol 42 (W1) ◽  
pp. W119-W123 ◽  
Author(s):  
Patrick R. Wright ◽  
Jens Georg ◽  
Martin Mann ◽  
Dragos A. Sorescu ◽  
Andreas S. Richter ◽  
...  
Keyword(s):  
Small Rna ◽  
Rna Targets ◽  
Interaction Domains

scholarly journals Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data

BMC Genomics ◽  
2014 ◽  
Vol 15 (1) ◽  
pp. 15 ◽  
Author(s):  
Cheng-Yu Hou ◽  
Ming-Tsung Wu ◽  
Shin-Hua Lu ◽  
Yue-Ie Hsing ◽  
Ho-Ming Chen
Keyword(s):  
Small Rna ◽  
Rna Targets

scholarly journals Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation

Cell Reports ◽  
2020 ◽  
Vol 30 (9) ◽  
pp. 3127-3138.e6 ◽  
Author(s):  
Raya Faigenbaum-Romm ◽  
Avichai Reich ◽  
Yair E. Gatt ◽  
Meshi Barsheshet ◽  
Liron Argaman ◽  
...  
Keyword(s):  
Small Rna ◽  
Rna Targets

Identifying Hfq-binding small RNA targets in Escherichia coli

2006 ◽  
Vol 343 (3) ◽  
pp. 950-955 ◽  
Author(s):  
Yong Zhang ◽  
Shiwei Sun ◽  
Tao Wu ◽  
Jie Wang ◽  
Changning Liu ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Small Rna ◽  
Rna Targets
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