scholarly journals Stock Structure and Homing Fidelity in Gulf of Mexico Sturgeon (Acipenser oxyrinchus desotoi) Based on Restriction Fragment Length Polymorphism and Sequence Analyses of Mitochondrial DNA

Genetics ◽  
1996 ◽  
Vol 144 (2) ◽  
pp. 767-775 ◽  
Author(s):  
Joseph Stabile ◽  
John R Waldman ◽  
Frank Parauka ◽  
Isaac Wirgin

Abstract Efforts have been proposed worldwide to restore sturgeon populations through the use of hatcheries to supplement natural reproduction and to reintroduce sturgeon where they have become extinct. We examined the population structure and inferred the extent of homing in the anadromous Gulf of Mexico (Gulf) sturgeon (Acipenser oxyrinchus desotoi). Restriction fragment length polymorphism and control region sequence analyses of mitochondrial DNA (mtDNA) were used to identify haplotypes of Gulf sturgeon specimens obtained from eight drainages spanning the subspecies' entire distribution from Louisiana to Florida. Significant differences in haplotype frequencies indicated substantial geographic structuring of populations. A minimum of four regional or river-specific populations were identified (from west to east): (1) Pearl River, LA and Pascagoula River, MS, (2) Escambia and Yellow rivers, FL, (3) Choctawhatchee River, FL, and (4) Apalachicola, Ochlockonee, and Suwannee rivers, FL. Estimates of maternally mediated gene flow between any pair of the four regional or river-specific stocks ranged between 0.15 to 1.2. Tandem repeats in the mtDNA control region of Gulf sturgeon were not perfectly conserved. This result, together with an absence of heteroplasmy and length variation in Gulf sturgeon mtDNA, indicates that the molecular mechanisms of mtDNA control region sequence evolution differ among acipenserids.

1998 ◽  
Vol 55 (12) ◽  
pp. 2539-2547 ◽  
Author(s):  
W Stewart Grant ◽  
A -M Clark ◽  
Brian W Bowen

Restriction fragment length polymorphism (RFLP) and nucleotide sequence analysis of mitochondrial DNA (mtDNA) have generated conflicting hypotheses on the phylogeography of Indian-Pacific clupeid Sardinops. An RFLP analysis of the control region and adjoining segments indicates a phylogenetic affiliation between southern Africa - Australian and Japanese sardines whereas comparisons of an overlapping segment of the control region sequence indicate an affiliation between southern Africa - Australian and Chile-Californian sardines. An analysis of 258 bp of mtDNA cytochrome b in 74 individuals of Sardinops from South Africa, Australia, Chile, California, and Japan revealed 24 haplotypes, resulting in high levels of haplotypic (h) diversity (average h = 0.70), low levels of nucleotide (pi) diversity (average pi = 0.005), and a satisfactory level of divergence (d) for population resolution (dmax = 4.02%). Cluster and parsimony analyses of haplotypic divergences confirmed the existence of three lineages corresponding to southern Africa - Australia, Chile-California, and Japan but failed to confirm a biogeographic connection between Australia and Japan. These results support the model based on control region sequences and highlight potential pitfalls of RFLP analyses of highly polymorphic DNA sequences with numerous homoplaseous transitions. A comparaison of 220 bp of cytochrome b in samples of Sardina and Sardinops produced an average sequence divergence of 23.2% and supports an ancient divergence between Sardina and Sardinops. The three lineages of Indian-Pacific Sardinops may merit subspecies recognition, based on low but significant levels of mtDNA divergence between them and on evidence of separations between these groups on the order of 200 000 - 500 000 years.


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