Modeling the dynamics of a 21‐gene, 50‐edge gene regulatory network controlling the transcriptional response to cold shock in
            Saccharomyces cerevisiae
            using GRNmap

Gene Regulatory Network ◽

Regulatory Network ◽

Cold Shock ◽

Transcriptional Response ◽

Mathematical modeling of the gene regulatory network controlling the cold shock response in Saccharomyces cerevisiae

The FASEB Journal ◽

10.1096/fasebj.24.1_supplement.671.2 ◽

2010 ◽

Vol 24 (S1) ◽

Author(s):

Alondra J Vega ◽

Stephanie D Kuelbs ◽

Ben G Fitzpatrick ◽

Kam D Dahlquist

Keyword(s):

Mathematical Modeling ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Cold Shock ◽

Cold Shock Response ◽

Shock Response ◽

Mathematical modeling shows that Gln3 and Zap1 affect the dynamics of the gene regulatory network controlling the cold shock response in Saccharomyces cerevisiae

The FASEB Journal ◽

10.1096/fasebj.30.1_supplement.819.9 ◽

2016 ◽

Vol 30 (S1) ◽

Author(s):

Tessa A. Morris ◽

Kristen M. Horstmann ◽

Kayla C. Jackson ◽

Ben G. Fitzpatrick ◽

Kam D. Dahlquist

Keyword(s):

Mathematical Modeling ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Cold Shock ◽

Cold Shock Response ◽

Shock Response ◽

Boolean gene regulatory network model of centromere function in Saccharomyces cerevisiae

Journal of Biological Physics ◽

10.1007/s10867-019-09526-4 ◽

2019 ◽

Vol 45 (3) ◽

pp. 235-251

Author(s):

Emir Haliki ◽

Nursen Alpagut Keskin ◽

Ozgur Masalci

Keyword(s):

Gene Regulatory Network ◽

Network Model ◽

Regulatory Network ◽

Centromere Function ◽

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

Nucleic Acids Research ◽

10.1093/nar/gkt631 ◽

2013 ◽

Vol 41 (18) ◽

pp. 8452-8463 ◽

Cited By ~ 15

Author(s):

L. Geistlinger ◽

G. Csaba ◽

S. Dirmeier ◽

R. Kuffner ◽

R. Zimmer

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Diauxic Shift ◽

Dynamic gene regulatory network analysis using Saccharomyces cerevisiae large-scale time-course microarray data

2017 IEEE International Symposium on Circuits and Systems (ISCAS) ◽

10.1109/iscas.2017.8050662 ◽

2017 ◽

Author(s):

L. Zhang ◽

H. C. Wu ◽

J. Q. Lin ◽

S. C. Chan

Keyword(s):

Network Analysis ◽

Gene Regulatory Network ◽

Microarray Data ◽

Regulatory Network ◽

Large Scale ◽

Time Course ◽

Increasing galactose consumption by Saccharomyces cerevisiae through metabolic engineering of the GAL gene regulatory network

Nature Biotechnology ◽

10.1038/82400 ◽

2000 ◽

Vol 18 (12) ◽

pp. 1283-1286 ◽

Cited By ~ 125

Author(s):

Simon Ostergaard ◽

Lisbeth Olsson ◽

Mark Johnston ◽

Jens Nielsen

Keyword(s):

Metabolic Engineering ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Computational Intelligence in Bioinformatics - Studies in Computational Intelligence ◽

Saccharomyces pombe and Saccharomyces cerevisiae Gene Regulatory Network Inference Using the Fuzzy Logic Network

10.1007/978-3-540-76803-6_10 ◽

2008 ◽

pp. 237-256

Author(s):

Yingjun Cao ◽

Paul P. Wang ◽

Alade Tokuta

Keyword(s):

Fuzzy Logic ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Network Inference ◽

Gene Regulatory Network Inference ◽

Logic Network ◽

Saccharomyces Pombe ◽

Faculty Opinions recommendation of A gene regulatory network for root epidermis cell differentiation in Arabidopsis.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.13923961.15380063 ◽

2012 ◽

Author(s):

Renze Heidstra

Keyword(s):

Cell Differentiation ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Root Epidermis ◽

Gene Regulatory ◽

Epidermis Cell

Faculty Opinions recommendation of A gene regulatory network controlling the embryonic specification of endoderm.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718560070.793514574 ◽

2016 ◽

Author(s):

David McClay

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Faculty Opinions recommendation of An Arabidopsis gene regulatory network for secondary cell wall synthesis.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.725287898.793503865 ◽

2015 ◽

Author(s):

Niko Geldner ◽

Tonni Andersen

Keyword(s):

Cell Wall ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Secondary Cell Wall ◽

Cell Wall Synthesis ◽

Arabidopsis Gene ◽

Gene Regulatory ◽

Secondary Cell Wall Synthesis