scholarly journals Biological information: why we need a good measure and the challenges ahead

2013 ◽  
Vol 3 (6) ◽  
pp. 20130030 ◽  
Author(s):  
Minus van Baalen

Evolution can be characterized as a process that shapes and maintains information across generations. It is also widely acknowledged that information may play a pivotal role in many other ecological processes. Most of the ecologically relevant information (and some important evolutionary information too) is of a very subjective and analogue kind: individuals use cues that may carry information useful only to them but not to others. This is a problem because most information theory has been developed for objective and discrete information. Can information theory be extended to this theory to incorporate multiple forms of information, each with its own (physical) carriers and dynamics? Here, I will not review all the possible roles that information can play, but rather what conditions an appropriate theory should satisfy. The most promising starting point is provided by entropy measures of conditional probabilities (using the so-called Kullback–Leibler divergence), allowing an assessment of how acquiring information can lead to an increase in fitness. It is irrelevant (to a certain extent) where the information comes from—genes, experience or culture—but it is important to realize that information is not merely subjective but its value should be evaluated in fitness terms, and it is here that evolutionary theory has an enormous potential. A number of important stumbling points remain, however; namely, the identification of whose fitness it concerns and what role the spatio-temporal dynamics plays (which is tightly linked to the nature of the physical carriers of the information and the processes that impact on it).

Author(s):  
P. K. Joshi ◽  
Neena Priyanka

The dynamics of land use/land cover (LU/LC) is a manifestation of the cyclic correlation among the kind and magnitude of causes, impacts, responses and resulting ecological processes of the ecosystem. Thus, the holistic understanding of the complex mechanisms that control LU/LC requires synergetic adoption of measurement approaches, addressing issues, and identifying drivers of change and state of art technologies for mitigation measures. As the spatio-temporal heterogeneity of the LU/LC increases, its impact on biodiversity becomes even more difficult to anticipate. Thus, in order to understand the spatio-temporal dynamics of change in landscape and its relationship to biodiversity, it is necessary to reliably identify and quantify the indicators of change. In addition, it is also important to have better understanding of the technologies and techniques that serve as complimentary tool for land mitigation and conservation planning. Against this background, the chapter aims to synthesize LU/LC studies worldwide and their impacts on biodiversity. This chapter explores identification and analysis of key natural, socio-economic and regulatory drivers for LU/LC. Finally, it attempts to collate some LU/LC studies involving usage of geospatial tools, such as satellite remote sensing, Geographic Information System (GIS), Global Positioning System (GPS), and integrative tools, besides conventional approaches that could assist decision makers, land managers, stakeholders and researchers in better management and formulation of conservation strategies based on scientific grounds.


2007 ◽  
Vol 21 (3-4) ◽  
pp. 176-187 ◽  
Author(s):  
Yury Shtyrov ◽  
Friedemann Pulvermüller

The article considers neurophysiological and psycholinguistic motivations for applying mismatch negativity (MMN) to studying the language function, briefly reviews the current evidence in the field, and offers some further directions for research in this area. MMN, a well-known index of automatic acoustic change detection, has also been found to be a sensitive indicator of long-term memory traces for native language sounds (phonemes, syllables). When comparing MMNs to words and meaningless pseudowords, we found larger amplitudes for words than for meaningless items. This was interpreted as a neurophysiological signature of word-specific memory circuits/cell assemblies activated in the human brain in a largely automatic and attention-independent fashion. This lexical enhancement of the word-elicited MMN has now been replicated by different groups using different languages and methodologies. We have also demonstrated that, using MMN, it is possible to register differences in the brain response to individual words and even to different aspects of referential semantics, confirming that the cortical memory circuits of individual lexical items can be revealed by the MMN. In other studies, we found evidence that the mismatch negativity reflects automatic syntactic processing commencing as early as ~100 ms after relevant information becomes available in the acoustic input. More recently, MMN responses were found to be sensitive to semantic context integration processes. In summary, neurophysiological imaging of the MMN response provides a unique opportunity to see subtle spatio-temporal dynamics of the neural processes underlying the language function in the human cortex in lexical, semantic, and syntactic domains.


2018 ◽  
Author(s):  
Julia Marchetti ◽  
Alexander Miguel Monzon ◽  
Silvio C.E. Tosatto ◽  
Gustavo Parisi ◽  
María Silvina Fornasari

AbstractInter-residue contacts determine the structural properties for each conformer in the ensembles describing the native state of proteins. Structural constraints during evolution could then provide biologically relevant information about the conformational ensembles and their relationship with protein function. Here, we studied the proportion of sites evolving under structural constraints in two very different types of ensembles, those coming from ordered or disordered proteins. Using a structurally constrained model of protein evolution we found that both types of ensembles show comparable, near 40%, number of positions evolving under structural constraints. Among these sites, ~68% are in disordered regions and ~57% of them show long-range inter-residue contacts. Also, we found that disordered ensembles are redundant in reference to their structurally constrained evolutionary information and could be described on average with ~11 conformers. Despite the different complexity of the studied ensembles and proteins, the similar constraints reveal a comparable level of selective pressure to maintain their biological functions. These results highlight the importance of the evolutionary information to recover meaningful biological information to further characterize conformational ensembles.


2013 ◽  
pp. 1913-1939 ◽  
Author(s):  
P. K. Joshi ◽  
Neena Priyanka

The dynamics of land use/land cover (LU/LC) is a manifestation of the cyclic correlation among the kind and magnitude of causes, impacts, responses and resulting ecological processes of the ecosystem. Thus, the holistic understanding of the complex mechanisms that control LU/LC requires synergetic adoption of measurement approaches, addressing issues, and identifying drivers of change and state of art technologies for mitigation measures. As the spatio-temporal heterogeneity of the LU/LC increases, its impact on biodiversity becomes even more difficult to anticipate. Thus, in order to understand the spatio-temporal dynamics of change in landscape and its relationship to biodiversity, it is necessary to reliably identify and quantify the indicators of change. In addition, it is also important to have better understanding of the technologies and techniques that serve as complimentary tool for land mitigation and conservation planning. Against this background, the chapter aims to synthesize LU/LC studies worldwide and their impacts on biodiversity. This chapter explores identification and analysis of key natural, socio-economic and regulatory drivers for LU/LC. Finally, it attempts to collate some LU/LC studies involving usage of geospatial tools, such as satellite remote sensing, Geographic Information System (GIS), Global Positioning System (GPS), and integrative tools, besides conventional approaches that could assist decision makers, land managers, stakeholders and researchers in better management and formulation of conservation strategies based on scientific grounds.


2020 ◽  
Vol 637 ◽  
pp. 117-140 ◽  
Author(s):  
DW McGowan ◽  
ED Goldstein ◽  
ML Arimitsu ◽  
AL Deary ◽  
O Ormseth ◽  
...  

Pacific capelin Mallotus catervarius are planktivorous small pelagic fish that serve an intermediate trophic role in marine food webs. Due to the lack of a directed fishery or monitoring of capelin in the Northeast Pacific, limited information is available on their distribution and abundance, and how spatio-temporal fluctuations in capelin density affect their availability as prey. To provide information on life history, spatial patterns, and population dynamics of capelin in the Gulf of Alaska (GOA), we modeled distributions of spawning habitat and larval dispersal, and synthesized spatially indexed data from multiple independent sources from 1996 to 2016. Potential capelin spawning areas were broadly distributed across the GOA. Models of larval drift show the GOA’s advective circulation patterns disperse capelin larvae over the continental shelf and upper slope, indicating potential connections between spawning areas and observed offshore distributions that are influenced by the location and timing of spawning. Spatial overlap in composite distributions of larval and age-1+ fish was used to identify core areas where capelin consistently occur and concentrate. Capelin primarily occupy shelf waters near the Kodiak Archipelago, and are patchily distributed across the GOA shelf and inshore waters. Interannual variations in abundance along with spatio-temporal differences in density indicate that the availability of capelin to predators and monitoring surveys is highly variable in the GOA. We demonstrate that the limitations of individual data series can be compensated for by integrating multiple data sources to monitor fluctuations in distributions and abundance trends of an ecologically important species across a large marine ecosystem.


2012 ◽  
Vol 34 (2) ◽  
pp. 277-293 ◽  
Author(s):  
Sam Solnick

This paper suggests that certain conceptual, ethical and economic issues surrounding genetics are also relevant to the challenges that climate change poses to the humanities. It takes J.H. Prynne's and Derrida's engagements with biology and information theory as a starting point to address climate modelling, emissions management, biofuels, bioengineering and the importance of scientific competence.


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