scholarly journals ABC-finder: A containerized web server for the identification and topology prediction of ABC proteins

2020 ◽  
Author(s):  
Poonam Vishwakarma ◽  
Naveen Kumar Meena ◽  
Rajendra Prasad ◽  
Andrew M. Lynn ◽  
Atanu Banerjee
Keyword(s):  
Abc Transporter ◽  
Web Server ◽  
Web Browser ◽  
Abc Proteins ◽  
Transporter Proteins ◽  
Link Type ◽  
And Topology ◽  
Topology Prediction

ABSTRACTIn view of the multiple clinical and physiological implications of ABC transporter proteins, there is a considerable interest among researchers to characterize them functionally. However, such characterizations are based on the premise that ABC proteins are accurately identified in the genome, and their topology is correctly predicted. With this objective, we have developed ABC-finder, i.e., a Docker-based package for the identification of ABC proteins in all organisms, and visualization of the topology of ABC proteins using an interactive web browser. ABC-finder is built and deployed in a Linux container, making it scalable for many concurrent users on our servers and enabling users to download and run it locally. Overall, ABC-finder is a convenient, portable, and platform-independent tool for the identification and topology prediction of ABC proteins.ABC-finder is accessible at http://abc-finder.osdd.jnu.ac.in

scholarly journals ABC-finder: A containerized web server for the identification and topology prediction of ABC proteins

2021 ◽  
pp. 183640
Author(s):  
Poonam Vishwakarma ◽  
Naveen Kumar Meena ◽  
Rajendra Prasad ◽  
Andrew M. Lynn ◽  
Atanu Banerjee
Keyword(s):  
Web Server ◽  
Abc Proteins ◽  
And Topology ◽  
Topology Prediction

scholarly journals RANDOMIZE: A Web Server for Data Randomization

2020 ◽  
Author(s):  
Agaz H Wani ◽  
D Armstrong ◽  
Jan Dahrendorff ◽  
Monica Uddin
Keyword(s):  
Dna Methylation ◽  
Microarray Data ◽  
Web Server ◽  
Batch Effects ◽  
Web Browser ◽  
Web Based ◽  
Link Type ◽  
Sample Data

AbstractSummaryDNA methylation microarray data may suffer from batch effects due to improper handling of the samples during the plating process. RANDOMIZE is a web-based application designed to perform randomization of relevant metadata to evenly distribute samples across the factors typically responsible for batch effects in DNA methylation microarrays, such as row, chips and plates. Randomization helps to reduce the likelihood of bias and impact of difference among groups.AvailabilityThe tool is freely available online at https://coph-usf.shinyapps.io/RANDOMIZE/ and can be accessed using any web browser. Sample data and tutorial is also available with the [email protected]

scholarly journals User Identification in the Process of Web Usage Data Preprocessing

2019 ◽  
Vol 14 (09) ◽  
pp. 21 ◽  
Author(s):  
Jozef Kapusta ◽  
Michal Munk ◽  
Dominik Halvoník ◽  
Martin Drlík
Keyword(s):  
User Behavior ◽  
Web Server ◽  
Web Browser ◽  
Ip Address ◽  
User Session ◽  
Log Files ◽  
The Us ◽  
Log File ◽  
Default Form

If we are talking about user behavior analytics, we have to understand what the main source of valuable information is. One of these sources is definitely a web server. There are multiple places where we can extract the necessary data. The most common ways are to search for these data in access log, error log, custom log files of web server, proxy server log file, web browser log, browser cookies etc. A web server log is in its default form known as a Common Log File (W3C, 1995) and keeps information about IP address; date and time of visit; ac-cessed and referenced resource. There are standardized methodologies which contain several steps leading to extract new knowledge from provided data. Usu-ally, the first step is in each one of them to identify users, users’ sessions, page views, and clickstreams. This process is called pre-processing. Main goal of this stage is to receive unprocessed web server log file as input and after processing outputs meaningful representations which can be used in next phase. In this pa-per, we describe in detail user session identification which can be considered as most important part of data pre-processing. Our paper aims to compare the us-er/session identification using the STT with the identification of user/session us-ing cookies. This comparison was performed concerning the quality of the se-quential rules generated, i.e., a comparison was made regarding generation useful, trivial and inexplicable rules.

scholarly journals Perancangan Prototype Smart Home Dengan Konsep Internet of Thing ( IoT) Berbasis Web Server

2019 ◽  
pp. 65-79
Author(s):  
Hasri Awal
Keyword(s):  
Smart Home ◽  
Web Server ◽  
Web Browser ◽  
Internet Of Everything ◽  
Internet Of Thing

Seiring dengan perkembangan zaman dan meningkatnya ekonomi masyarakat permintaan akan kebutuhan rumah yang aman dan nyaman kian meningkat, serta penggunaan internet yang tanpa kita sadari hadir pada kehidupan kita sehari hari menjadikan kita sebagai masyarakat yang berada dalam putaran IoE (Internet of Everything) sehingga saya tertarik untuk mengembangkan smart home dengan konsep Internet of Thing sebagai sekala yang lebih kecil dari Internet of Everything Laporan ini adalah hasil dari pembuatan karya prototype smart home dengan konsep internet of thing menggunakan arduino Wemos D1 dan web browser, membahas mengenai cara kerja dari hubungan arduino wemos d1 yang di kontrol melalui website sebagai langkah penerapan internet of thing dengan menggunakan ip public, menggunakan device komputer sebagai perantara dan dibantu dengan. Dengan adanya prototype ini diharapkan para pengembang selanjutnya baik dari akademisi maupun non-akademisi dapat mengetahui dan mempelajari konsep gabungan antara smart home dan internet of thing secara lebih interaktif, walaupun penulis menyadari masih banyak yang harus diperbaiki dan dikembangkan dari prototype yang penulis buat ini

scholarly journals The ABC transporter proteins Pat1 and Pat2 are required for import of long-chain fatty acids into peroxisomes of Saccharomyces cerevisiae.

1996 ◽  
Vol 15 (15) ◽  
pp. 3813-3822 ◽  
Author(s):  
E. H. Hettema ◽  
C. W. van Roermund ◽  
B. Distel ◽  
M. van den Berg ◽  
C. Vilela ◽  
...  
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Fatty Acids ◽  
Abc Transporter ◽  
Long Chain Fatty Acids ◽  
Transporter Proteins ◽  
Long Chain ◽  
Chain Fatty Acids

The Achievement of Web Server in the Development of ARM Embedded System

2013 ◽  
Vol 389 ◽  
pp. 1047-1050
Author(s):  
Yan Jie Zhang ◽  
Xue Yong Wang ◽  
Hong Suo Zhou
Keyword(s):  
Embedded System ◽  
Web Server ◽  
Embedded Operating System ◽  
Long Distance ◽  
Web Browser ◽  
Response Information ◽  
Arm Microprocessor ◽  
Embedded Gateway ◽  
Embedded Applications ◽  
Arm Embedded System

Based on open source embedded operating system uClinux, embedded applications system taking ARM microprocessor as the core was connected with Internet. Through embedding Web server to the ARM embedded system functions and adding embedded Gateway Interface CGI program, the interactive delivery with the long-distance customers Web browser order and response information come true.

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