scholarly journals Measuring the Importance of Vertices in the Weighted Human Disease Network

2018 ◽  
Author(s):  
Seyed Mehrzad Almasi ◽  
Ting Hu

AbstractMany human genetic disorders and diseases are known to be related to each other through frequently observed co-occurrences. Studying the correlations among multiple diseases provides an important avenue to better understand the common genetic background of diseases and to help develop new drugs that can treat multiple diseases. Meanwhile, network science has seen increasing applications on modeling complex biological systems, and can be a powerful tool to elucidate the correlations of multiple human diseases. In this article, known disease-gene associations were represented using a weighted bipartite network. We extracted a weighted human diseases network from such a bipartite network to show the correlations of diseases. Subsequently, we proposed a new centrality measurement for the weighted human disease network in order to quantify the importance of diseases. Using our centrality measurement to quantify the importance of vertices in the weighted human disease network, we were able to find a set of most central diseases. By investigating the 30 top diseases and their most correlated neighbors in the network, we identified disease linkages including known disease pairs and novel findings. Our research helps better understand the common genetic origin of human diseases and suggests top diseases that likely induce other related diseases.

2016 ◽  
Vol 43 (6) ◽  
pp. 349-367 ◽  
Author(s):  
Olfat Al-Harazi ◽  
Sadiq Al Insaif ◽  
Monirah A. Al-Ajlan ◽  
Namik Kaya ◽  
Nduna Dzimiri ◽  
...  

2011 ◽  
Vol 29 (1) ◽  
pp. 55-72 ◽  
Author(s):  
Kenneth Wysocki ◽  
Leslie Ritter

Using bioinformatics computational tools, network maps that integrate the complex interactions of genetics and diseases have been developed. The purpose of this review is to introduce the reader to new approaches in understanding disease–gene associations using network maps, with an emphasis on how the human disease network (HDN) map (or diseasome) was constructed. A search was conducted in PubMed using the years 1999–2011 and using key words diseasome, molecular interaction, interactome, protein–protein interaction, and gene. The information reviewed included journal reviews, open source and webbased databases, and open source computational tools.


2007 ◽  
Vol 104 (21) ◽  
pp. 8685-8690 ◽  
Author(s):  
K.-I. Goh ◽  
M. E. Cusick ◽  
D. Valle ◽  
B. Childs ◽  
M. Vidal ◽  
...  

2011 ◽  
Vol 19 (7) ◽  
pp. 783-788 ◽  
Author(s):  
Xuehong Zhang ◽  
Ruijie Zhang ◽  
Yongshuai Jiang ◽  
Peng Sun ◽  
Guoping Tang ◽  
...  

2015 ◽  
Vol 19 (4) ◽  
pp. 897-916 ◽  
Author(s):  
Hossein Rahmani ◽  
Hendrik Blockeel ◽  
Andreas Bender

2013 ◽  
Vol 1 (1) ◽  
pp. 20-28 ◽  
Author(s):  
Frank Emmert-Streib ◽  
Shailesh Tripathi ◽  
Ricardo de Matos Simoes ◽  
Ahmed F Hawwa ◽  
Matthias Dehmer

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