molecular interaction
Recently Published Documents


TOTAL DOCUMENTS

1800
(FIVE YEARS 376)

H-INDEX

75
(FIVE YEARS 10)

Author(s):  
Sae Nagai ◽  
Yuta Inaba ◽  
Toshio Nishi ◽  
Shigetaka Tomiya

Abstract The temperature-dependent molecular orientation variation of pentacene (PEN) on a graphene-covered substrate (PEN/Gr) was investigated via p-polarized multiple-angle incidence resolution spectrometry (pMAIRS). The temperature regime of the orientation transition of PEN/Gr was different from that of PEN/SiO2. The collective orientation barrier (COB), an energy barrier that molecules need to overcome to form a standing orientation, was estimated via pMAIRS. Consequently, the COB of PEN/Gr was found to be 10 times larger than that of PEN/SiO2. This indicated that the COB is valuable for understanding the effect of substrate interaction on the molecular orientation.


Author(s):  
HOLIS ABDUL HOLIK ◽  
FAISAL MAULANA IBRAHIM ◽  
ELISHA WIANATALIE ◽  
ARIFUDIN ACHMAD ◽  
AHMAD FARIED ◽  
...  

Objective: In this study, various types of pharmacokinetic modifying linkers and chelators are combined with JPH203 to obtain the best-docked molecule for prospective radiopharmaceutical kits. Methods: AutoDock 4.2.6 and AutoDockTools 1.5.6 programs was used to do the molecular docking simulation and ADMET prediction was done using VNN-ADMET to predict the pharmacokinetics and toxicity of the ligand. Results: The result of this study showed that JPH203-linker K-NOTA has the best affinity with a docking score of about-10.7 kcal/mol and shows hydrogen interaction with Tyr259, which acts as key residue of the active site. Conclusion: Based on the results, JPH203-linker K-NOTA has good potential as a radiopharmaceutical kit of cancer.


2021 ◽  
pp. 339396
Author(s):  
Iro K. Ventouri ◽  
Susanne Loeber ◽  
Govert W. Somsen ◽  
Peter J. Schoenmakers ◽  
Alina Astefanei

PLoS ONE ◽  
2021 ◽  
Vol 16 (11) ◽  
pp. e0257870
Author(s):  
Prashant Swapnil ◽  
Mukesh Meena ◽  
Ashwani K. Rai

Nitrate transport in cyanobacteria is mediated by ABC-transporter, which consists of a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). Under salt stress, recombinant glycinebetaine (GB) not only protected the rate of nitrate transport in transgenic Anabaena PCC 7120, rather stimulated the rate by interacting with the ABC-transporter proteins. In silico analyses revealed that nrtA protein consisted of 427 amino acids, the majority of which were hydrophobic and contained a Tat (twin-arginine translocation) signal profile of 34 amino acids (1–34). The nrtC subunit of 657 amino acids contained two hydrophobic distinct domains; the N-terminal (5–228 amino acids), which was 59% identical to nrtD (the ATP-binding subunit) and the C-terminal (268–591), 28.2% identical to nrtA, suggesting C-terminal as a solute binding domain and N-terminal as ATP binding domain. Subunit nrtD consisted of 277 amino acids and its N-terminal (21–254) was an ATP binding motif. Phylogenetic analysis revealed that nitrate-ABC-transporter proteins are highly conserved among the cyanobacterial species, though variation existed in sequences resulting in several subclades. Nostoc PCC 7120 was very close to Anabaena variabilis ATCC 29413, Anabaena sp. 4–3 and Anabaena sp. CA = ATCC 33047. On the other, Nostoc spp. NIES-3756 and PCC 7524 were often found in the same subclade suggesting more work before referring it to Anabaena PCC 7120 or Nostoc PCC 7120. The molecular interaction of nitrate with nrtA was hydrophilic, while hydrophobic with nrtC and nrtD. GB interaction with nrtACD was hydrophobic and showed higher affinity compared to nitrate.


Sign in / Sign up

Export Citation Format

Share Document