scholarly journals One molecule, three crystal structures: conformational trimorphism of N-[(1S)-1-phenylethyl]benzamide

2020 ◽  
Vol 76 (8) ◽  
pp. 1229-1233
Author(s):  
Fermin Flores Manuel ◽  
Martha Sosa Rivadeneyra ◽  
Sylvain Bernès

The title compound, C15H15NO, is an enantiopure small molecule, which has been synthesized many times, although its crystal structure was never determined. By recrystallization from a variety of solvent mixtures (pure acetonitrile, ethanol–water, toluene–ethanol, THF–methanol), we obtained three unsolvated polymorphs, in space groups P21 and P212121. Form I is obtained from acetonitrile, without admixture of other forms, whereas forms II and III are obtained simultaneously by concomitant crystallizations from alcohol-based solvent mixtures. All forms share the same supramolecular structure, based on infinite C 1 1(4) chain motifs formed by N—H...O intermolecular hydrogen bonds, as usual for non-sterically hindered amides. However, a conformational modification of the molecular structure, related to the rotation of the phenyl rings, alters the packing of the chains in the crystal structures. The orientation of the chain axis is perpendicular and parallel to the crystallographic twofold screw axis of space group P21 in forms I and II, respectively. As for form III, the asymmetric unit contains two independent molecules forming parallel chains in space group P212121, and the crystal structure combines features of monoclinic forms I and II.

The object of the present paper is to express the conclusions of mathematical crystallography in a form which shall be immediately useful to workers using homogeneous X-rays for the analysis of crystal structures. The results are directly applicable to such methods as the Bragg ionisation method, the powder method, the rotating crystal method, etc., and summarise in as compact a form as possible what inferences may be made from the experimental observations, whichever one of the 230 possible space-groups may happen to be under examination. It is only in certain cases that the spacings of crystal planes as determined by the aid of homogeneous X-rays agree with the values of those spacings which would be expected from ordinary crystallographic calculations. In the majority of cases the relative arrangement of the molecules in the unit cell leads to apparent anomalies in the experimental results, the observed spacings of certain planes or sets of planes being sub-multiples of the calculated spacings. The simplest case (fig. 8) of such an apparent anomaly is found in the space-group C 2 2 of the monoclinic system, where the presence of a two-fold screw-axis, because it interleaves halfway the (010) planes by molecules which are exactly like those lying in the (010) planes, except that they have been rotated through 180°, leads to an observed periodicity which is half the periodicity to be inferred from the dimensions of the unit cell, that is, leads to an observed spacing for (010) which is half the calculated. All screw-axes produce similar results, and, in general, a p -fold screw-axis leads to an observed spacing for the plane perpendicular to it which is 1/ p th that to be inferred from the dimensions of the cell. Besides those produced by the screw-axes, other abnormalities arise out of the presence of glide-planes. The simplest case of this is shown by the space-group C s 2 (fig. 4) of the monoclinic system, in which the second molecule is obtained from the first by a reflection in a plane parallel to (010) and half a primitive translation parallel to that plane. If we look along a direction perpendicular to this glide-plane, the projections of the two molecules on the (010) plane are indistinguishable except in position, which is equivalent to saying that, for the purposes of X-ray interference, certain planes perpendicular to this plane of projection are interleaved by an identical molecular distribution. Furthermore, since the translation associated with the glide-plane must always be half a primitive translation parallel to the glide-plane, we know that the interleaving is always a submultiple of the full spacing and the periodicity is again reduced in a corresponding manner. The use of this method for discriminating between the various space-groups of the monoclinic system was described by Sir Wm. Bragg in a lecture to the Chemical Society. In the present paper the method has been extended to the whole of the 230 space-groups possible to crystalline structures. In general, it may be said that if a crystal possesses a certain glide-plane, a certain set of planes lying in the zone whose axis is perpendicular to that glide-plane will have their periodicity reduced by one-half.


2000 ◽  
Vol 33 (2) ◽  
pp. 307-311 ◽  
Author(s):  
Maria Cristina Burla ◽  
Benedetta Carrozzini ◽  
Giovanni Luca Cascarano ◽  
Carmelo Giacovazzo ◽  
Giampiero Polidori

Crystal structure solution inP1 may be particularly suitable for complex crystal structures crystallizing in other space groups. However, additional efforts and human intervention are often necessary to locate correctly the structural model so obtained with respect to an allowed origin of the actual space group. An automatic procedure is described which is able to perform such a task, allowing the routine passage to the correct space group and the subsequent structure refinement. Some tests are presented proving the effectiveness of the procedure.


IUCrData ◽  
2018 ◽  
Vol 3 (4) ◽  
Author(s):  
Nadine Seidel ◽  
Wilhelm Seichter ◽  
Edwin Weber

The crystal structure of the title compound, C28H20Br2O, was solved in the orthorhombic space group P212121 with one molecule in the asymmetric unit. The phenyl rings are nearly planar and inclined at angles of 67.7 (1), 68.8 (1), 79.3 (1) and 62.3 (1)° to the plane of the 2,5-dihydrofuran ring. The crystal structure features C—H...π and Br...Br interactions, which connect the molecules to a three-dimensional supramolecular network.


1989 ◽  
Vol 44 (10) ◽  
pp. 1187-1194 ◽  
Author(s):  
Walter Abriel ◽  
André du Bois

With the determination of the crystal structure of (NH4)2TeI6 the list of the descriptions of A2TeX6 structures is further completed. At 293 K three structure types are observed with an antifluorite packing of cations and anions: The cubic K2PtCl6 type structure (space group Fm 3̄ m, Z = 4), the tetragonal Rb2TeI6 type structure (space group P4/mnc, Z = 2), and the monoclinic K2TeBr6 type structure (space group P21/n, Z = 2). The latter type was found for (NH4)2TeI6 with a = 8.0694(7), b = 8.0926(9), c = 11.7498(8) Å and β = 89.605(8)° and refined to a final Rw of 0.065. From ionic radii ratios the symmetry of the A2MX6 type structures can be predicted including a prediction of low temperature instability (soft mode condensation). Group-subgroup relationships connect the corresponding space groups and the space groups of the high/low temperature polymorphs.


1991 ◽  
Vol 44 (11) ◽  
pp. 1585 ◽  
Author(s):  
y Effend ◽  
LM Engelhardt ◽  
PC Healy ◽  
BW Skelton ◽  
AH White

Redetermination of the room-temperature crystal structures of mononuclear chloro- and bromo-pyridinebis ( triphenylphosphine )silver(I) (previously described in space group P21/m) and di-μ-iodo-bis [(pyridine)( triphenylphosphine )silver(I)](previously described in space group C2/m), consequent upon the availability of crystals of improved quality, has permitted the reassignment of space groups as P21/a (with doubled a axis) and C2/c respectively, by virtue of the facilitated detection of weak superlattice reflections. Crystals of [ Cl,BrAg ( py )(PPh3)2] are monoclinic, P21/a, a ≈ 19.6, b ≈ 20.0, c ≈ 9.1Ǻ, β ≈ 97.5°, Z = 4; the structures were refined to residuals of 0.034 and 0.040 for 2965 and 2315 'observed' reflections respectively. [(PPh3)( py )AgI2Ag( py )(PPh3)] is monoclinic, C2/c, a 27.145(6), b 14.548(3), c 11.316(4)Ǻ, β 94.83(2)°, Z 4, refining to R 0.035 for 1892 'observed' reflections, and isomorphous with the [(PPh3)( py )CuX2Cu( py )(PPh3)] family. In spite of this reassignment, the previous descriptions of the AgX /N/P cores of the species are essentially unchanged, the previous residuals of the misassigned space group determinations being comparable with the present; the only non- trivial change lies in the fact that the disordered phenyl rings of the earlier work are now fully ordered. It now seems certain that the 'second polymorph' of [(PPh3)( py )CuBr2Cu( py )(PPh3)], recorded as being isomorphous with its C2/m silver iodide counterpart, is spurious and a consequence of the use of an inferior specimen.


2021 ◽  
Vol 236 (1-2) ◽  
pp. 11-21
Author(s):  
Evgeny V. Nazarchuk ◽  
Oleg I. Siidra ◽  
Dmitry O. Charkin ◽  
Stepan N. Kalmykov ◽  
Elena L. Kotova

Abstract Three new rubidium polychromates, Rb2[(UO2)(Cr2O7)(NO3)2] (1), γ-Rb2Cr3O10 (2) and δ-Rb2Cr3O10 (3) were prepared by combination of hydrothermal treatment at 220 °C and evaporation of aqueous solutions under ambient conditions. Compound 1 is monoclinic, P 2 1 / c $P{2}_{1}/c$ , a = 13.6542(19), b = 19.698(3), c = 11.6984(17) Å, β = 114.326(2)°, V = 2867.0(7) Å3, R 1 = 0.040; 2 is hexagonal, P 6 3 / m $P{6}_{3}/m$ , a = 11.991(2), c = 12.828(3) Å, γ = 120°, V = 1597.3(5) Å3, R 1 = 0.031; 3 is monoclinic, P 2 1 / n $P{2}_{1}/n$ , a = 7.446(3), b = 18.194(6), c = 7.848(3) Å, β = 99.953(9)°, V = 1047.3(7) Å3, R 1 = 0.037. In the crystal structure of 1, UO8 bipyramids and NO3 groups share edges to form [(UO2)(NO3)2] species which share common corners with dichromate Cr2O7 groups producing novel type of uranyl dichromate chains [(UO2)(Cr2O7)(NO3)2]2−. In the structures of new Rb2Cr3O10 polymorphs, CrO4 tetrahedra share vertices to form Cr3O10 2− species. The trichromate groups are aligned along the 63 screw axis forming channels running in the ab plane in the structure of 2. The Rb cations reside between the channels and in their centers completing the structure. The trichromate anions are linked by the Rb+ cations into a 3D framework in the structure of 3. Effect of solution acidity on the crystallization of polychromates in uranyl-bearing systems is discussed.


2014 ◽  
Vol 70 (10) ◽  
pp. o1085-o1086
Author(s):  
Mathias O. Senge ◽  
Hans-Georg Eckhardt

In the title compound, C44H37BN4O2, the dihedral angle between the plane of the porphyrin macrocycle ring system [r.m.s. deviation = 0.159 (1) Å] and those of three phenyl rings are 66.11 (4), 74.75 (4) and 57.00 (4)°. The conformational distortion is characterized by a mixture of ruffled, saddle and in-plane distortion modes. In the crystal, the porphyrin molecules are linked by C—H...π interactions into supramolecular chains running along thea-axis direction. A pair of bifurcated N—H...(N,N) hydrogen bonds occur across the central region of the macrocycle.


2006 ◽  
Vol 62 (5) ◽  
pp. o1910-o1912 ◽  
Author(s):  
Ray J. Butcher ◽  
H. S. Yathirajan ◽  
B. K. Sarojini ◽  
B. Narayana ◽  
J. Indira

The title compound, C22H22O3, demonstrates a two-photon absorption. Its metrical parameters are similar to those of related cyclohexanone derivatives. In the crystal structure, two sets of centrosymmetric dimers formed by weak C—H...O intermolecular hydrogen bonds combine to form molecular tapes along [101].


2007 ◽  
Vol 63 (3) ◽  
pp. o1188-o1189 ◽  
Author(s):  
Wei-Jian Xu ◽  
Yang-Ling Zang ◽  
Guo-Liang Wu ◽  
Sheng-Pei Su ◽  
De-Yue Qiu

The title compound, C14H11BrO, was synthesized by the reaction of 4-methylbenzophenone and bromine in carbon tetrachloride. X-ray crystal structure analysis reveals that the benzene and phenyl rings form a dihedral angle of 59.53 (6)°, and the crystal packing is stabilized by intermolecular C—H...π interactions.


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