Support vector-based fuzzy system for the prediction of mouse class I MHC peptide binding affinity

13th IEEE International Conference on BioInformatics and BioEngineering ◽

10.1109/bibe.2013.6701561 ◽

2013 ◽

Cited By ~ 6

Author(s):

Volkan Uslan ◽

Huseyin Seker

Keyword(s):

Binding Affinity ◽

Fuzzy System ◽

Peptide Binding ◽

Class I ◽

Support Vector ◽

Class I Mhc ◽

Peptide Binding Affinity ◽

Mouse Class

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New horizons in mouse immunoinformatics: reliable in silico prediction of mouse class I histocompatibility major complex peptide binding affinity

Organic & Biomolecular Chemistry ◽

10.1039/b409656h ◽

2004 ◽

Vol 2 (22) ◽

pp. 3274 ◽

Cited By ~ 9

Author(s):

Channa K. Hattotuwagama ◽

Pingping Guan ◽

Irini A. Doytchinova ◽

Darren R. Flower

Keyword(s):

Binding Affinity ◽

In Silico ◽

Peptide Binding ◽

Class I ◽

In Silico Prediction ◽

New Horizons ◽

Peptide Binding Affinity ◽

Mouse Class

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Overlapping Clusters and Support Vector Machines Based Interval Type-2 Fuzzy System for the Prediction of Peptide Binding Affinity

IEEE Access ◽

10.1109/access.2019.2910078 ◽

2019 ◽

Vol 7 ◽

pp. 49756-49764 ◽

Cited By ~ 3

Author(s):

Volkan Uslan ◽

Huseyin Seker ◽

Robert John

Keyword(s):

Support Vector Machines ◽

Binding Affinity ◽

Fuzzy System ◽

Peptide Binding ◽

Support Vector ◽

Overlapping Clusters ◽

Vector Machines ◽

Interval Type ◽

Peptide Binding Affinity

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Static Energy Analysis of MHC Class I and Class II Peptide-Binding Affinity

Methods in Molecular Biology - Immunoinformatics ◽

10.1007/978-1-60327-118-9_23 ◽

2007 ◽

pp. 309-320 ◽

Cited By ~ 5

Author(s):

Matthew N. Davies ◽

Darren R. Flower

Keyword(s):

Binding Affinity ◽

Mhc Class I ◽

Energy Analysis ◽

Peptide Binding ◽

Class Ii ◽

Class I ◽

Static Energy ◽

Peptide Binding Affinity

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NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data

The Journal of Immunology ◽

10.4049/jimmunol.1700893 ◽

2017 ◽

Vol 199 (9) ◽

pp. 3360-3368 ◽

Cited By ~ 404

Author(s):

Vanessa Jurtz ◽

Sinu Paul ◽

Massimo Andreatta ◽

Paolo Marcatili ◽

Bjoern Peters ◽

...

Keyword(s):

Binding Affinity ◽

Mhc Class I ◽

Peptide Binding ◽

Class I ◽

Peptide Binding Affinity

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In Silico Prediction of Peptide Binding Affinity to Class I Mouse Major Histocompatibility Complexes: A Comparative Molecular Similarity Index Analysis (CoMSIA) Study

Journal of Chemical Information and Modeling ◽

10.1021/ci049667l ◽

2005 ◽

Vol 45 (5) ◽

pp. 1415-1423 ◽

Cited By ~ 12

Author(s):

Channa K. Hattotuwagama ◽

Irini A. Doytchinova ◽

Darren R. Flower

Keyword(s):

Binding Affinity ◽

In Silico ◽

Molecular Similarity ◽

Peptide Binding ◽

Similarity Index ◽

Class I ◽

In Silico Prediction ◽

Index Analysis ◽

Major Histocompatibility Complexes ◽

Peptide Binding Affinity

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Quantitative prediction of peptide binding affinity by using hybrid fuzzy support vector regression

Applied Soft Computing ◽

10.1016/j.asoc.2016.01.024 ◽

2016 ◽

Vol 43 ◽

pp. 210-221 ◽

Cited By ~ 15

Author(s):

Volkan Uslan ◽

Huseyin Seker

Keyword(s):

Support Vector Regression ◽

Binding Affinity ◽

Peptide Binding ◽

Quantitative Prediction ◽

Support Vector ◽

Peptide Binding Affinity

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QSAR method for prediction of protein-peptide binding affinity: Application to MHC class I molecule HLA-A*0201

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2006.12.002 ◽

2007 ◽

Vol 26 (1) ◽

pp. 246-254 ◽

Cited By ~ 14

Author(s):

Chunyan Zhao ◽

Haixia Zhang ◽

Feng Luan ◽

Ruisheng Zhang ◽

Mancang Liu ◽

...

Keyword(s):

Binding Affinity ◽

Mhc Class I ◽

Peptide Binding ◽

Class I ◽

Mhc Class I Molecule ◽

Peptide Binding Affinity

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Dimerization of Soluble Disulfide Trap Single-Chain Major Histocompatibility Complex Class I Molecules Dependent on Peptide Binding Affinity

Antioxidants and Redox Signaling ◽

10.1089/ars.2010.3691 ◽

2011 ◽

Vol 15 (3) ◽

pp. 635-644

Author(s):

Eleni Kotsiou ◽

Joanna Brzostek ◽

Izabela Lenart ◽

Antony N. Antoniou ◽

Julian Dyson ◽

...

Keyword(s):

Major Histocompatibility Complex ◽

Major Histocompatibility Complex Class ◽

Binding Affinity ◽

Peptide Binding ◽

Class I ◽

Complex Class ◽

Major Histocompatibility ◽

Single Chain ◽

Histocompatibility Complex ◽

Peptide Binding Affinity

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Additive Method for the Prediction of Protein−Peptide Binding Affinity. Application to the MHC Class I Molecule HLA-A*0201

Journal of Proteome Research ◽

10.1021/pr015513z ◽

2002 ◽

Vol 1 (3) ◽

pp. 263-272 ◽

Cited By ~ 47

Author(s):

Irini A. Doytchinova ◽

Martin J. Blythe ◽

Darren R. Flower

Keyword(s):

Binding Affinity ◽

Mhc Class I ◽

Peptide Binding ◽

Class I ◽

Additive Method ◽

Mhc Class I Molecule ◽

Peptide Binding Affinity

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Toward the Prediction of Class I and II Mouse Major Histocompatibility Complex-Peptide-Binding Affinity

Methods in Molecular Biology - Immunoinformatics ◽

10.1007/978-1-60327-118-9_16 ◽

2007 ◽

pp. 227-245 ◽

Cited By ~ 8

Author(s):

Channa K. Hattotuwagama ◽

Irini A. Doytchinova ◽

Darren R. Flower

Keyword(s):

Major Histocompatibility Complex ◽

Binding Affinity ◽

Peptide Binding ◽

Class I ◽

Major Histocompatibility ◽

Mouse Major Histocompatibility Complex ◽

Histocompatibility Complex ◽

Peptide Binding Affinity

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