In silico design of synthetic gene network for control of gene expression

2015 ◽  
Author(s):  
S. Mohamadabadi ◽  
M. Barkhordari Yazdi
Keyword(s):  
Gene Expression ◽  
In Silico ◽  
Gene Network ◽  
Synthetic Gene ◽  
Control Of Gene Expression ◽  
In Silico Design ◽  
Synthetic Gene Network

Synthetic Gene Network with Positive Feedback Loop Amplifies Cellulase Gene Expression in Neurospora crassa

2018 ◽  
Vol 7 (5) ◽  
pp. 1395-1405 ◽  
Author(s):  
Toru Matsu-ura ◽  
Andrey A. Dovzhenok ◽  
Samuel T. Coradetti ◽  
Krithika R. Subramanian ◽  
Daniel R. Meyer ◽  
...  
Keyword(s):  
Gene Expression ◽  
Neurospora Crassa ◽  
Positive Feedback ◽  
Gene Network ◽  
Feedback Loop ◽  
Synthetic Gene ◽  
Cellulase Gene ◽  
Positive Feedback Loop ◽  
Synthetic Gene Network

scholarly journals Development of a synthetic gene network to modulate gene expression by mechanical forces

2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Zoltán Kis ◽  
Tania Rodin ◽  
Asma Zafar ◽  
Zhangxing Lai ◽  
Grace Freke ◽  
...  
Keyword(s):  
Gene Expression ◽  
Gene Network ◽  
Synthetic Gene ◽  
Mechanical Forces ◽  
Synthetic Gene Network

scholarly journals Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network

eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Kevin Axelrod ◽  
Alvaro Sanchez ◽  
Jeff Gore
Keyword(s):  
Gene Network ◽  
Environmental Variability ◽  
Synthetic Gene ◽  
Phenotypic Switching ◽  
Proper Function ◽  
Critical Transition ◽  
Environmental Perturbations ◽  
The Face ◽  
Synthetic Gene Network ◽  
Open Question

Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function. However, cells frequently experience unexpected environmental perturbations that might induce phenotypic switching. How cells maintain phenotypic states in the face of environmental fluctuations remains an open question. Here, we use environmental perturbations to characterize the resilience of phenotypic states in a synthetic gene network near a critical transition. We find that far from the critical transition an environmental perturbation may induce little to no phenotypic switching, whereas close to the critical transition the same perturbation can cause many cells to switch phenotypic states. This loss of resilience was observed for perturbations that interact directly with the gene circuit as well as for a variety of generic perturbations-such as salt, ethanol, or temperature shocks-that alter the state of the cell more broadly. We obtain qualitatively similar findings in natural gene circuits, such as the yeast GAL network. Our findings illustrate how phenotypic memory can become destabilized by environmental variability near a critical transition.

Internal noise stochastic resonance of synthetic gene network

2005 ◽  
Vol 401 (1-3) ◽  
pp. 307-311 ◽  
Author(s):  
Zhiwei Wang ◽  
Zhonghuai Hou ◽  
Houwen Xin
Keyword(s):  
Stochastic Resonance ◽  
Gene Network ◽  
Internal Noise ◽  
Synthetic Gene ◽  
Synthetic Gene Network

Synthetic Gene Network for Entraining and Amplifying Cellular Oscillations

2002 ◽  
Vol 88 (14) ◽  
Author(s):  
Jeff Hasty ◽  
Milos Dolnik ◽  
Vivi Rottschäfer ◽  
James J. Collins
Keyword(s):  
Gene Network ◽  
Synthetic Gene ◽  
Synthetic Gene Network

Influences of a periodic signal on a noisy synthetic gene network

2011 ◽  
Vol 54 (6) ◽  
pp. 992-997
Author(s):  
Yan Liu ◽  
Nan Li
Keyword(s):  
Gene Network ◽  
Synthetic Gene ◽  
Periodic Signal ◽  
Synthetic Gene Network

scholarly journals Analyzing negative feedback using a synthetic gene network expressed in the Drosophila melanogaster embryo

2016 ◽  
Vol 10 (1) ◽  
Author(s):  
Ashley A. Jermusyk ◽  
Nicholas P. Murphy ◽  
Gregory T. Reeves
Keyword(s):  
Drosophila Melanogaster ◽  
Negative Feedback ◽  
Gene Network ◽  
Synthetic Gene ◽  
Synthetic Gene Network

An integrative circuit–host modelling framework for predicting synthetic gene network behaviours

2017 ◽  
Vol 2 (12) ◽  
pp. 1658-1666 ◽  
Author(s):  
Chen Liao ◽  
Andrew E. Blanchard ◽  
Ting Lu
Keyword(s):  
Gene Network ◽  
Synthetic Gene ◽  
Modelling Framework ◽  
Synthetic Gene Network

Noise-aided computation within a synthetic gene network through morphable and robust logic gates

2011 ◽  
Vol 83 (4) ◽  
Author(s):  
Anna Dari ◽  
Behnam Kia ◽  
Xiao Wang ◽  
Adi R. Bulsara ◽  
William Ditto
Keyword(s):  
Gene Network ◽  
Logic Gates ◽  
Synthetic Gene ◽  
Synthetic Gene Network
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