Time-efficient Bayesian Inference for a (Skewed) Von Mises Distribution on the Torus in a Deep Probabilistic Programming Language

Author(s):  
Ola Ronning ◽  
Christophe Ley ◽  
Kanti V. Mardia ◽  
Thomas Hamelryck
2021 ◽  
Vol 5 (OOPSLA) ◽  
pp. 1-28
Author(s):  
Eric Atkinson ◽  
Guillaume Baudart ◽  
Louis Mandel ◽  
Charles Yuan ◽  
Michael Carbin

Probabilistic programming languages aid developers performing Bayesian inference. These languages provide programming constructs and tools for probabilistic modeling and automated inference. Prior work introduced a probabilistic programming language, ProbZelus, to extend probabilistic programming functionality to unbounded streams of data. This work demonstrated that the delayed sampling inference algorithm could be extended to work in a streaming context. ProbZelus showed that while delayed sampling could be effectively deployed on some programs, depending on the probabilistic model under consideration, delayed sampling is not guaranteed to use a bounded amount of memory over the course of the execution of the program. In this paper, we the present conditions on a probabilistic program’s execution under which delayed sampling will execute in bounded memory. The two conditions are dataflow properties of the core operations of delayed sampling: the m -consumed property and the unseparated paths property . A program executes in bounded memory under delayed sampling if, and only if, it satisfies the m -consumed and unseparated paths properties. We propose a static analysis that abstracts over these properties to soundly ensure that any program that passes the analysis satisfies these properties, and thus executes in bounded memory under delayed sampling.


2021 ◽  
Author(s):  
Nicolas Kuehn ◽  
Peter Stafford

We provide a simple introduction to the estimation of ground-motion models via Bayesian inference and the probabilistic programming language Stan.We show one ca implement a simple ground-motion model in Stan, and how can run the program from the computer environment R.We also show how one can access the results, and plot summaries of estimated parameters.A large number of different Stan models for the development https://github.com/pstafford/StanGMMTutorial.


1982 ◽  
Vol 11 (15) ◽  
pp. 1695-1706 ◽  
Author(s):  
E.A. Yfantis ◽  
L.E. Borgman

2021 ◽  
Vol 15 (9) ◽  
pp. 471-479
Author(s):  
Nurkhairany Amyra Mokhtar ◽  
Basri Badyalina ◽  
Kerk Lee Chang ◽  
Fatin Farazh Ya'acob ◽  
Ahmad Faiz Ghazali ◽  
...  

2015 ◽  
Vol 52 (3) ◽  
pp. 359-370
Author(s):  
ADRIAN KOLLER ◽  
GUILHERME TORRES ◽  
MICHAEL BUSER ◽  
RANDY TAYLOR ◽  
BILL RAUN ◽  
...  

SUMMARYHand-planted plots of across-row-oriented corn seeds (Zeamays L.) produce highly structured leaf canopies and have shown significant yield advantage over randomly planted plots in prior studies. For further investigation of the phenomenon by simulation, the objective of this study was to develop a probabilistic model for the correlation between seed orientation and initial plant orientation. In greenhouse trials, the azimuthal orientation of kernels of four different hybrids was recorded at planting. At collar setting of the seed leaf, the orientation of the seed leaf was determined and the angular data subjected to the analytical methods of circular statistics. The results indicate that the correlation between seed azimuth and seed leaf azimuth can be described by a von Mises distribution. The probabilistic seed to seed leaf azimuth model described herein may be implemented in simulation models to investigate the effect of canopy architecture, canopy closure and light interception efficiency of corn under conditions of seed oriented planting.


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