A time-frequency block structure approach to denoising sleep EEG

2017 ◽  
Author(s):  
Mark McCurry ◽  
Mark Clements
1998 ◽  
Vol 31 (3) ◽  
pp. 209-229 ◽  
Author(s):  
Cédric Richard ◽  
Régis Lengelle

Physiology ◽  
2017 ◽  
Vol 32 (1) ◽  
pp. 60-92 ◽  
Author(s):  
Michael J. Prerau ◽  
Ritchie E. Brown ◽  
Matt T. Bianchi ◽  
Jeffrey M. Ellenbogen ◽  
Patrick L. Purdon

During sleep, cortical and subcortical structures within the brain engage in highly structured oscillatory dynamics that can be observed in the electroencephalogram (EEG). The ability to accurately describe changes in sleep state from these oscillations has thus been a major goal of sleep medicine. While numerous studies over the past 50 years have shown sleep to be a continuous, multifocal, dynamic process, long-standing clinical practice categorizes sleep EEG into discrete stages through visual inspection of 30-s epochs. By representing sleep as a coarsely discretized progression of stages, vital neurophysiological information on the dynamic interplay between sleep and arousal is lost. However, by using principled time-frequency spectral analysis methods, the rich dynamics of the sleep EEG are immediately visible—elegantly depicted and quantified at time scales ranging from a full night down to individual microevents. In this paper, we review the neurophysiology of sleep through this lens of dynamic spectral analysis. We begin by reviewing spectral estimation techniques traditionally used in sleep EEG analysis and introduce multitaper spectral analysis, a method that makes EEG spectral estimates clearer and more accurate than traditional approaches. Through the lens of the multitaper spectrogram, we review the oscillations and mechanisms underlying the traditional sleep stages. In doing so, we will demonstrate how multitaper spectral analysis makes the oscillatory structure of traditional sleep states instantaneously visible, closely paralleling the traditional hypnogram, but with a richness of information that suggests novel insights into the neural mechanisms of sleep, as well as novel clinical and research applications.


2020 ◽  
Vol 2 (3) ◽  
pp. 258-272
Author(s):  
Daphne Chylinski ◽  
Franziska Rudzik ◽  
Dorothée Coppieters ‘t Wallant ◽  
Martin Grignard ◽  
Nora Vandeleene ◽  
...  

Arousals during sleep are transient accelerations of the EEG signal, considered to reflect sleep perturbations associated with poorer sleep quality. They are typically detected by visual inspection, which is time consuming, subjective, and prevents good comparability across scorers, studies and research centres. We developed a fully automatic algorithm which aims at detecting artefact and arousal events in whole-night EEG recordings, based on time-frequency analysis with adapted thresholds derived from individual data. We ran an automated detection of arousals over 35 sleep EEG recordings in healthy young and older individuals and compared it against human visual detection from two research centres with the aim to evaluate the algorithm performance. Comparison across human scorers revealed a high variability in the number of detected arousals, which was always lower than the number detected automatically. Despite indexing more events, automatic detection showed high agreement with human detection as reflected by its correlation with human raters and very good Cohen’s kappa values. Finally, the sex of participants and sleep stage did not influence performance, while age may impact automatic detection, depending on the human rater considered as gold standard. We propose our freely available algorithm as a reliable and time-sparing alternative to visual detection of arousals.


Author(s):  
A. Takajyo ◽  
M. Katayama ◽  
K. Inoue ◽  
K. Kumamaru ◽  
S. Matsuoka

2004 ◽  
Vol 63 (5) ◽  
pp. 399-405 ◽  
Author(s):  
Fabrizio De Carli ◽  
Lino Nobili ◽  
Manolo Beelke ◽  
Tsuyoshi Watanabe ◽  
Arianna Smerieri ◽  
...  

2020 ◽  
Author(s):  
Robert G. Law ◽  
Shaun M. Purcell

Abstract[WORKING DRAFT] In order to relate health and disease to brain state, patterns of activity in the brain must be phenotyped. In this regard, polysomnography datasets present both an opportunity and a challenge, as although sleep data are extensive and multidimensional, features of the sleep EEG are known to correlate with clinical outcomes. Machine learning methods for rank reduction are attractive means for bringing the phenotyping problem to a manageable size. The whole-night power spectrogram is nonnegative, and so applying nonnegative matrix factorization (NMF) to separate spectrograms into time and frequency factors is a natural choice for dimension reduction. However, NMF converges differently depending on initial conditions, and there is no guarantee that factors obtained from one individual will be comparable with those from another, hampering inter-individual analysis.We therefore reseed time-frequency NMF with group frequency factors obtained from the entire sample. This “refactorization” extends classical frequency bands to frequency factors. The group reseeding procedure coerces factors into equivalence classes, making them comparable across individuals. By comparing frequency factor properties, we illustrate age-related effects on the sleep EEG. The procedure can presumably be adapted to higher resolutions, e.g. to local field potential datasets, for characterizing individual time-frequency events.


2009 ◽  
Vol 185 (1) ◽  
pp. 133-142 ◽  
Author(s):  
P.Y. Ktonas ◽  
S. Golemati ◽  
P. Xanthopoulos ◽  
V. Sakkalis ◽  
M.D. Ortigueira ◽  
...  

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