Incorporation of Solvent Effect into Multi-Objective Evolutionary Algorithm for Improved Protein Structure Prediction

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2017.2705094 ◽

2018 ◽

Vol 15 (4) ◽

pp. 1365-1378 ◽

Author(s):

Shangce Gao ◽

Shuangbao Song ◽

Jiujun Cheng ◽

Yuki Todo ◽

MengChu Zhou

Keyword(s):

Protein Structure ◽

Solvent Effect ◽

Evolutionary Algorithm ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Multi Objective

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A multi-objective evolutionary algorithm for protein structure prediction with immune operators

Computer Methods in Biomechanics & Biomedical Engineering ◽

10.1080/10255840802649715 ◽

2009 ◽

Vol 12 (4) ◽

pp. 407-413 ◽

Author(s):

M.V. Judy ◽

K.S. Ravichandran ◽

K. Murugesan

Keyword(s):

Protein Structure ◽

Evolutionary Algorithm ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Multi Objective

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A Multi-objective Approach to the Protein Structure Prediction Problem using the Biased Random-Key Genetic Algorithm

2021 IEEE Congress on Evolutionary Computation (CEC) ◽

10.1109/cec45853.2021.9504745 ◽

2021 ◽

Author(s):

Felipe Marchi ◽

Rafael Stubs Parpinelli

Keyword(s):

Genetic Algorithm ◽

Protein Structure ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Prediction Problem ◽

Multi Objective ◽

Protein Structure Prediction Problem

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AIMOES: Archive information assisted multi-objective evolutionary strategy for ab initio protein structure prediction

Knowledge-Based Systems ◽

10.1016/j.knosys.2018.01.028 ◽

2018 ◽

Vol 146 ◽

pp. 58-72 ◽

Author(s):

Shuangbao Song ◽

Shangce Gao ◽

Xingqian Chen ◽

Dongbao Jia ◽

Xiaoxiao Qian ◽

...

Keyword(s):

Protein Structure ◽

Ab Initio ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Evolutionary Strategy ◽

Multi Objective

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Protein Structure Prediction by Evolutionary Multi-objective Optimization: Search Space Reduction by Using Rotamers

Lecture Notes in Computer Science - Bio-Inspired Systems: Computational and Ambient Intelligence ◽

10.1007/978-3-642-02478-8_108 ◽

2009 ◽

pp. 861-868

Author(s):

J. C. Calvo ◽

J. Ortega ◽

M. Anguita ◽

J. M. Urquiza ◽

J. P. Florido

Keyword(s):

Protein Structure ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Search Space ◽

Multi Objective Optimization ◽

Multi Objective ◽

Space Reduction ◽

Search Space Reduction ◽

Optimization Search

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A Multi-Objective Stochastic Optimization Approach for Decoy Generation in Template-Free Protein Structure Prediction

Biophysical Journal ◽

10.1016/j.bpj.2018.11.365 ◽

2019 ◽

Vol 116 (3) ◽

pp. 59a

Author(s):

Ahmed Bin Zaman ◽

Amarda Shehu

Keyword(s):

Protein Structure ◽

Stochastic Optimization ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Optimization Approach ◽

Free Protein ◽

Multi Objective ◽

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A Hybrid Evolutionary Algorithm for Protein Structure Prediction Using the Face-Centered Cubic Lattice Model

Neural Information Processing - Lecture Notes in Computer Science ◽

10.1007/978-3-319-70087-8_65 ◽

2017 ◽

pp. 628-638 ◽

Author(s):

Daniel Varela ◽

José Santos

Keyword(s):

Protein Structure ◽

Evolutionary Algorithm ◽

Protein Structure Prediction ◽

Lattice Model ◽

Structure Prediction ◽

Face Centered Cubic ◽

Cubic Lattice ◽

Hybrid Evolutionary Algorithm ◽

The Face ◽

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Comparison of parallel multi-objective approaches to protein structure prediction

The Journal of Supercomputing ◽

10.1007/s11227-009-0368-4 ◽

2009 ◽

Vol 58 (2) ◽

pp. 253-260 ◽

Author(s):

J. C. Calvo ◽

J. Ortega ◽

M. Anguita

Keyword(s):

Protein Structure ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Multi Objective

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DIFFERENTIAL EVOLUTION TO MULTI-OBJECTIVE PROTEIN STRUCTURE PREDICTION

Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms ◽

10.5220/0003767002950298 ◽

2012 ◽

Keyword(s):

Protein Structure ◽

Differential Evolution ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Multi Objective

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Evolutionary algorithm for protein structure prediction

2010 Sixth International Conference on Natural Computation ◽

10.1109/icnc.2010.5584796 ◽

2010 ◽

Author(s):

Nashat Mansour ◽

Fatima Kanj ◽

Hassan Khachfe

Keyword(s):

Protein Structure ◽

Evolutionary Algorithm ◽

Protein Structure Prediction ◽

Structure Prediction

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Evolutionary algorithm to ab initio protein structure prediction with hydrophobic interactions

2007 IEEE Congress on Evolutionary Computation ◽

10.1109/cec.2007.4424527 ◽

2007 ◽

Author(s):

T. W. de Lima ◽

P. H. R. Gabriel ◽

A. C. B. Delbem ◽

R. A. Faccioli ◽

I. N. da Silva

Keyword(s):

Protein Structure ◽

Ab Initio ◽

Evolutionary Algorithm ◽

Protein Structure Prediction ◽

Structure Prediction ◽

Hydrophobic Interactions

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