Intron Removal Requires Proofreading of U2AF/3' Splice Site Recognition by DEK

Science ◽  
2006 ◽  
Vol 312 (5782) ◽  
pp. 1961-1965 ◽  
Author(s):  
L. M. M. Soares
2001 ◽  
Vol 21 (6) ◽  
pp. 1986-1996 ◽  
Author(s):  
Luiz O. F. Penalva ◽  
Maria José Lallena ◽  
Juan Valcárcel

ABSTRACT Maintenance of female sexual identity in Drosophila melanogaster involves an autoregulatory loop in which the protein Sex-lethal (SXL) promotes skipping of exon 3 from its own pre-mRNA. We have used transient transfection of Drosophila Schneider cells to analyze the role of exon 3 splice sites in regulation. Our results indicate that exon 3 repression requires competition between the 5′ splice sites of exons 2 and 3 but is independent of their relative strength. Two 3′ splice site AG's precede exon 3. We report here that, while the distal site plays a critical role in defining the exon, the proximal site is preferentially used for the actual splicing reaction, arguing for a switch in 3′ splice site recognition between exon definition and splicing catalysis. Remarkably, the presence of the two 3′ splice sites is important for the efficient regulation by SXL, suggesting that SXL interferes with molecular events occurring between initial splice site communication across the exon and the splice site pairing that leads to intron removal.


Cancers ◽  
2022 ◽  
Vol 14 (2) ◽  
pp. 281
Author(s):  
Carlos A. Niño ◽  
Rossella Scotto di Perrotolo ◽  
Simona Polo

Splicing alterations have been widely documented in tumors where the proliferation and dissemination of cancer cells is supported by the expression of aberrant isoform variants. Splicing is catalyzed by the spliceosome, a ribonucleoprotein complex that orchestrates the complex process of intron removal and exon ligation. In recent years, recurrent hotspot mutations in the spliceosome components U1 snRNA, SF3B1, and U2AF1 have been identified across different tumor types. Such mutations in principle are highly detrimental for cells as all three spliceosome components are crucial for accurate splice site selection: the U1 snRNA is essential for 3′ splice site recognition, and SF3B1 and U2AF1 are important for 5′ splice site selection. Nonetheless, they appear to be selected to promote specific types of cancers. Here, we review the current molecular understanding of these mutations in cancer, focusing on how they influence splice site selection and impact on cancer development.


2021 ◽  
Vol 8 (1) ◽  
Author(s):  
Satoshi Tamaoka ◽  
Erina Suzuki ◽  
Atsushi Hattori ◽  
Tsutomu Ogata ◽  
Maki Fukami ◽  
...  

AbstractAlthough NDNF was recently reported as a novel causative gene for congenital hypogonadotropic hypogonadism (CHH), this conclusion has yet to be validated. In this study, we sequenced NDNF in 61 Japanese CHH patients. No variants, except for nine synonymous substitutions that appear to have no effect on splice-site recognition, were identified in NDNF coding exons or flanking intronic sequences. These results indicate the rarity of NDNF variants in CHH patients and highlight the genetic heterogeneity of CHH.


Zebrafish ◽  
2018 ◽  
Vol 15 (6) ◽  
pp. 597-609 ◽  
Author(s):  
Ralph Slijkerman ◽  
Alexander Goloborodko ◽  
Sanne Broekman ◽  
Erik de Vrieze ◽  
Lisette Hetterschijt ◽  
...  
Keyword(s):  

RNA ◽  
2001 ◽  
Vol 7 (9) ◽  
pp. 1185-1191 ◽  
Author(s):  
PATRIK FÖRCH ◽  
LIVIA MERENDINO ◽  
CONCEPCIÓN MARTÍNEZ ◽  
JUAN VALCÁRCEL

1996 ◽  
Vol 8 (12) ◽  
pp. 2295
Author(s):  
Andrew J. McCullough ◽  
Clair E. Baynton ◽  
Mary A. Schuler
Keyword(s):  

RNA Biology ◽  
2010 ◽  
Vol 7 (1) ◽  
pp. 56-64 ◽  
Author(s):  
Monika Heiner ◽  
Jingyi Hui ◽  
Silke Schreiner ◽  
Lee-Hsueh Hung ◽  
Albrecht Bindereif

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