The PARP and rRNA promoters of Trypanosoma brucei are composed of dissimilar sequence elements that are functionally interchangeable

1994 ◽  
Vol 14 (9) ◽  
pp. 5804-5811
Author(s):  
L Janz ◽  
C Clayton
Keyword(s):  
Rna Polymerase ◽  
Rna Polymerase I ◽  
Surface Proteins ◽  
Surface Glycoprotein ◽  
African Trypanosomes ◽  
Sequence Elements ◽  
Major Surface Proteins ◽  
Major Surface ◽  
Polymerase I ◽  
Repetitive Protein

The African trypanosomes express two major surface proteins, the variant surface glycoprotein (VSG) and the procyclic acidic repetitive protein (PARP). The RNA polymerase that transcribes the VSG and PARP genes shares many characteristics with RNA polymerase I. We show that although there is very little similarity in nucleotide sequence, the functional structure of a trypanosome rRNA promoter is almost identical to that of the PARP promoter. Further, domains from the PARP promoter can functionally substitute for the corresponding parts of the rRNA promoter, and vice versa.

scholarly journals The PARP and rRNA promoters of Trypanosoma brucei are composed of dissimilar sequence elements that are functionally interchangeable.

1994 ◽  
Vol 14 (9) ◽  
pp. 5804-5811 ◽  
Author(s):  
L Janz ◽  
C Clayton
Keyword(s):  
Rna Polymerase ◽  
Rna Polymerase I ◽  
Surface Proteins ◽  
Surface Glycoprotein ◽  
African Trypanosomes ◽  
Sequence Elements ◽  
Major Surface Proteins ◽  
Major Surface ◽  
Polymerase I ◽  
Repetitive Protein

The African trypanosomes express two major surface proteins, the variant surface glycoprotein (VSG) and the procyclic acidic repetitive protein (PARP). The RNA polymerase that transcribes the VSG and PARP genes shares many characteristics with RNA polymerase I. We show that although there is very little similarity in nucleotide sequence, the functional structure of a trypanosome rRNA promoter is almost identical to that of the PARP promoter. Further, domains from the PARP promoter can functionally substitute for the corresponding parts of the rRNA promoter, and vice versa.

scholarly journals Nucleosomes Are Depleted at the VSG Expression Site Transcribed by RNA Polymerase I in African Trypanosomes

2009 ◽  
Vol 9 (1) ◽  
pp. 148-154 ◽  
Author(s):  
Luisa M. Figueiredo ◽  
George A. M. Cross
Keyword(s):  
Rna Polymerase ◽  
Antigenic Variation ◽  
Rna Polymerase I ◽  
Surface Glycoprotein ◽  
Micrococcal Nuclease ◽  
Rrna Genes ◽  
Host Immune System ◽  
African Trypanosomes ◽  
Pol I ◽  
Polymerase I

ABSTRACT In most eukaryotes, RNA polymerase I (Pol I) exclusively transcribes long arrays of identical rRNA genes (ribosomal DNA [rDNA]). African trypanosomes have the unique property of using Pol I to also transcribe the variant surface glycoprotein VSG genes. VSGs are important virulence factors because their switching allows trypanosomes to escape the host immune system, a mechanism known as antigenic variation. Only one VSG is transcribed at a time from one of 15 bloodstream-form expression sites (BESs). Although it is clear that switching among BESs does not involve DNA rearrangements and that regulation is probably epigenetic, it remains unknown why BESs are transcribed by Pol I and what roles are played by chromatin structure and histone modifications. Using chromatin immunoprecipitation, micrococcal nuclease digestion, and chromatin fractionation, we observed that there are fewer nucleosomes at the active BES and that these are irregularly spaced compared to silent BESs. rDNA coding regions are also depleted of nucleosomes, relative to the rDNA spacer. In contrast, genes transcribed by Pol II are organized in a more compact, regularly spaced, nucleosomal structure. These observations provide new insight on antigenic variation by showing that chromatin remodeling is an intrinsic feature of BES regulation.

scholarly journals An assembly of nuclear bodies associates with the active VSG expression site in African trypanosomes

2022 ◽  
Vol 13 (1) ◽  
Author(s):  
James Budzak ◽  
Robert Jones ◽  
Christian Tschudi ◽  
Nikolay G. Kolev ◽  
Gloria Rudenko
Keyword(s):  
Rna Polymerase I ◽  
Nuclear Bodies ◽  
Bloodstream Form ◽  
Surface Glycoprotein ◽  
Cajal Bodies ◽  
African Trypanosomes ◽  
Spliced Leader ◽  
Pol I ◽  
Expression Site ◽  
Polymerase I

AbstractA Variant Surface Glycoprotein (VSG) coat protects bloodstream form Trypanosoma brucei. Prodigious amounts of VSG mRNA (~7-10% total) are generated from a single RNA polymerase I (Pol I) transcribed VSG expression site (ES), necessitating extremely high levels of localised splicing. We show that splicing is required for processive ES transcription, and describe novel ES-associated T. brucei nuclear bodies. In bloodstream form trypanosomes, the expression site body (ESB), spliced leader array body (SLAB), NUFIP body and Cajal bodies all frequently associate with the active ES. This assembly of nuclear bodies appears to facilitate the extraordinarily high levels of transcription and splicing at the active ES. In procyclic form trypanosomes, the NUFIP body and SLAB do not appear to interact with the Pol I transcribed procyclin locus. The congregation of a restricted number of nuclear bodies at a single active ES, provides an attractive mechanism for how monoallelic ES transcription is mediated.

scholarly journals Inositol phosphate pathway controls transcription of telomeric expression sites in trypanosomes

2015 ◽  
Vol 112 (21) ◽  
pp. E2803-E2812 ◽  
Author(s):  
Igor Cestari ◽  
Ken Stuart
Keyword(s):  
Plasma Membrane ◽  
Trypanosoma Brucei ◽  
Antigenic Variation ◽  
Inositol Phosphate ◽  
Rna Polymerase I ◽  
Surface Glycoprotein ◽  
Variant Surface Glycoprotein ◽  
Activator Protein 1 ◽  
African Trypanosomes ◽  
Polymerase I

African trypanosomes evade clearance by host antibodies by periodically changing their variant surface glycoprotein (VSG) coat. They transcribe only one VSG gene at a time from 1 of about 20 telomeric expression sites (ESs). They undergo antigenic variation by switching transcription between telomeric ESs or by recombination of the VSG gene expressed. We show that the inositol phosphate (IP) pathway controls transcription of telomeric ESs and VSG antigenic switching in Trypanosoma brucei. Conditional knockdown of phosphatidylinositol 5-kinase (TbPIP5K) or phosphatidylinositol 5-phosphatase (TbPIP5Pase) or overexpression of phospholipase C (TbPLC) derepresses numerous silent ESs in T. brucei bloodstream forms. The derepression is specific to telomeric ESs, and it coincides with an increase in the number of colocalizing telomeric and RNA polymerase I foci in the nucleus. Monoallelic VSG transcription resumes after reexpression of TbPIP5K; however, most of the resultant cells switched the VSG gene expressed. TbPIP5K, TbPLC, their substrates, and products localize to the plasma membrane, whereas TbPIP5Pase localizes to the nucleus proximal to telomeres. TbPIP5Pase associates with repressor/activator protein 1 (TbRAP1), and their telomeric silencing function is altered by TbPIP5K knockdown. These results show that specific steps in the IP pathway control ES transcription and antigenic switching in T. brucei by epigenetic regulation of telomere silencing.

scholarly journals VEX1 controls the allelic exclusion required for antigenic variation in trypanosomes

2016 ◽  
Vol 113 (26) ◽  
pp. 7225-7230 ◽  
Author(s):  
Lucy Glover ◽  
Sebastian Hutchinson ◽  
Sam Alsford ◽  
David Horn
Keyword(s):  
Antigenic Variation ◽  
Negative Regulation ◽  
Rna Polymerase I ◽  
Surface Glycoprotein ◽  
Allelic Exclusion ◽  
Positive Regulation ◽  
African Trypanosomes ◽  
Pol I ◽  
Winner Takes All ◽  
Polymerase I

Allelic exclusion underpins antigenic variation and immune evasion in African trypanosomes. These bloodstream parasites use RNA polymerase-I (pol-I) to transcribe just one telomeric variant surface glycoprotein (VSG) gene at a time, producing superabundant and switchable VSG coats. We identified trypanosome VSG exclusion-1 (VEX1) using a genetic screen for defects in telomere-exclusive expression. VEX1 was sequestered by the active VSG and silencing of other VSGs failed when VEX1 was either ectopically expressed or depleted, indicating positive and negative regulation, respectively. Positive regulation affected VSGs and nontelomeric pol-I–transcribed genes, whereas negative regulation primarily affected VSGs. Negative regulation by VEX1 also affected telomeric pol-I–transcribed reporter constructs, but only when they contained blocks of sequence sharing homology with a pol-I–transcribed locus. We conclude that restricted positive regulation due to VEX1 sequestration, combined with VEX1-dependent, possibly homology-dependent silencing, drives a “winner-takes-all” mechanism of allelic exclusion.

scholarly journals Active RNA Polymerase I of Trypanosoma brucei Harbors a Novel Subunit Essential for Transcription

2007 ◽  
Vol 27 (17) ◽  
pp. 6254-6263 ◽  
Author(s):  
Tu N. Nguyen ◽  
Bernd Schimanski ◽  
Arthur Günzl
Keyword(s):  
Rna Polymerase ◽  
Trypanosoma Brucei ◽  
Surface Antigens ◽  
Amino Acid Sequences ◽  
Rna Polymerase I ◽  
Surface Glycoprotein ◽  
Sequence Motif ◽  
Cell Surface Antigens ◽  
Conserved Sequence ◽  
Polymerase I

ABSTRACT A unique characteristic of the protistan parasite Trypanosoma brucei is a multifunctional RNA polymerase I which, in addition to synthesizing rRNA as in other eukaryotes, transcribes gene units encoding the major cell surface antigens variant surface glycoprotein and procyclin. Thus far, purification of this enzyme has revealed nine orthologues of known subunits but no active enzyme. Here, we have epitope tagged the specific subunit RPB6z and tandem affinity purified RNA polymerase I from crude extract. The purified enzyme was active in both a nonspecific and a promoter-dependent transcription assay and exhibited enriched protein bands with apparent sizes of 31, 29, and 27 kDa. p31 and its trypanosomatid orthologues were identified, but their amino acid sequences have no similarity to proteins of other eukaryotes, nor do they contain a conserved sequence motif. Nevertheless, p31 cosedimented with purified RNA polymerase I, and RNA interferance-mediated silencing of p31 was lethal, affecting the abundance of rRNA. Moreover, extract of p31-silenced cells exhibited a specific defect in transcription of class I templates, which was remedied by the addition of purified RNA polymerase I, and an anti-p31 serum completely blocked RNA polymerase I-mediated transcription. We therefore dubbed this novel functional component of T. brucei RNA polymerase I TbRPA31.

scholarly journals Promoter occupancy of the basal class I transcription factor A differs strongly between active and silent VSG expression sites in Trypanosoma brucei

2013 ◽  
Vol 42 (5) ◽  
pp. 3164-3176 ◽  
Author(s):  
Tu N. Nguyen ◽  
Laura S. M. Müller ◽  
Sung Hee Park ◽  
T. Nicolai Siegel ◽  
Arthur Günzl
Keyword(s):  
Transcription Factor ◽  
Rna Polymerase ◽  
Trypanosoma Brucei ◽  
Transcription Initiation ◽  
Rna Polymerase I ◽  
Surface Glycoprotein ◽  
Class I ◽  
Monoallelic Expression ◽  
Promoter Occupancy ◽  
Polymerase I

Abstract Monoallelic expression within a gene family is found in pathogens exhibiting antigenic variation and in mammalian olfactory neurons. Trypanosoma brucei, a lethal parasite living in the human bloodstream, expresses variant surface glycoprotein (VSG) from 1 of 15 bloodstream expression sites (BESs) by virtue of a multifunctional RNA polymerase I. The active BES is transcribed in an extranucleolar compartment termed the expression site body (ESB), whereas silent BESs, located elsewhere within the nucleus, are repressed epigenetically. The regulatory mechanisms, however, are poorly understood. Here we show that two essential subunits of the basal class I transcription factor A (CITFA) predominantly occupied the promoter of the active BES relative to that of a silent BES, a phenotype that was maintained after switching BESs in situ. In these experiments, high promoter occupancy of CITFA was coupled to high levels of both promoter-proximal RNA abundance and RNA polymerase I occupancy. Accordingly, fluorescently tagged CITFA-7 was concentrated in the nucleolus and the ESB. Because a ChIP-seq analysis found that along the entire BES, CITFA-7 is specifically enriched only at the promoter, our data strongly indicate that monoallelic BES transcription is activated by a mechanism that functions at the level of transcription initiation.

scholarly journals Quantification of RNA Polymerase I transcriptional attenuation at the active VSG expression site in Trypanosoma brucei

2021 ◽  
Author(s):  
Nadine Weisert ◽  
Klara Thein ◽  
Helena Reis ◽  
Christian J Janzen
Keyword(s):  
Rna Polymerase ◽  
Trypanosoma Brucei ◽  
Antigenic Variation ◽  
Rna Polymerase I ◽  
Surface Glycoprotein ◽  
Transcriptional Elongation ◽  
Pol I ◽  
Expression Site ◽  
Polymerase I ◽  
Large Repertoire

The cell surface of the extracellular pathogen Trypanosoma brucei consists of a dense coat of variant surface glycoprotein (VSG), which enables the parasite to evade the immune system of the vertebrate host. Only one VSG gene from a large repertoire is expressed from a so-called bloodstream form expression site (BES) at a given timepoint. There are several BES in every parasite but only one is transcriptionally active. Other BES are silenced by transcriptional attenuation. Periodic activation of a previously-silenced BES results in differential VSG transcription and escape from the immune response. A process called antigenic variation. In contrast to gene transcription in other eukaryotes, the BES is transcribed by RNA polymerase I (Pol I). It was proposed that this highly-processive polymerase is needed to provide a sufficiently high transcription rate at the VSG gene. Surprisingly, we discovered a position-dependent Pol I activity and attenuation of transcriptional elongation also at the active BES. Transcription rates at the VSG gene appear to be comparable to Pol II-mediated transcription of house-keeping genes. Although these findings are in contradiction to the long-standing concept of continuously high transcription rates at the active BES in Trypanosoma brucei, they are complementary to recent groundbreaking findings about transcriptional regulation of VSG genes.

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