Transcriptome Sequencing Reveals a Complete Genome Sequence of Cowpea Aphid-Borne Mosaic Virus from Passion Fruit in Kenya

Analysis of transcriptome sequencing (RNA-Seq) data revealed a complete Cowpea aphid-borne mosaic virus (CABMV) genome from virus-infected passion fruit in Kenya. We compared it with six complete CABMV genomes, one each from Zimbabwe and Uganda and two each from Brazil and India.

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Whole transcriptome sequencing of diseased elephant foot yam reveals complete genome sequence of Dasheen mosaic virus

Virology Reports ◽

10.1016/j.virep.2014.11.001 ◽

2015 ◽

Vol 5 ◽

pp. 1-9 ◽

Cited By ~ 5

Author(s):

S. Kamala ◽

T. Makeshkumar ◽

J. Sreekumar ◽

S.K. Chakrabarti

Keyword(s):

Mosaic Virus ◽

Genome Sequence ◽

Complete Genome Sequence ◽

Complete Genome ◽

Transcriptome Sequencing ◽

Whole Transcriptome Sequencing ◽

Elephant Foot Yam ◽

Whole Transcriptome

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Next-Generation Sequencing Reveals the First Complete Genome Sequence of Cowpea aphid-borne mosaic virus from Uganda

Genome Announcements ◽

10.1128/genomea.01491-17 ◽

2018 ◽

Vol 6 (3) ◽

Cited By ~ 1

Author(s):

E. K. Mbeyagala ◽

P. Tukamuhabwa ◽

J. Bisikwa ◽

T. Holton ◽

S. B. Mukasa

Keyword(s):

Next Generation Sequencing ◽

Mosaic Virus ◽

Genome Sequence ◽

Complete Genome Sequence ◽

Complete Genome ◽

Indian Isolate ◽

Next Generation ◽

Genome Sequences ◽

Cowpea Aphid ◽

Generation Sequencing

ABSTRACT We present here the first complete genome sequence of Cowpea aphid-borne mosaic virus (CABMV) isolated from cowpea in Uganda and compare it with five CABMV complete genome sequences from Brazil (2), India (2), and Zimbabwe (1). It most resembled the genomes of two Brazilian isolates (MG-Avr and BR1) and one Indian isolate (RR3).

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The complete genome sequence and genome structure of passion fruit mosaic virus

Archives of Virology ◽

10.1007/s00705-011-0961-8 ◽

2011 ◽

Vol 156 (6) ◽

pp. 1093-1095 ◽

Cited By ~ 6

Author(s):

Yeon Sook Song ◽

Ki Hyun Ryu

Keyword(s):

Mosaic Virus ◽

Genome Sequence ◽

Complete Genome Sequence ◽

Complete Genome ◽

Genome Structure ◽

Passion Fruit

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Complete genome sequence of a Passion fruit yellow mosaic virus (PFYMV) isolate infecting purple passionfruit (Passiflora edulis f. edulis)

Revista Facultad Nacional de Agronomía Medellín ◽

10.15446/rfnam.v72n1.69438 ◽

2019 ◽

Vol 72 (1) ◽

pp. 8643-8654 ◽

Cited By ~ 1

Author(s):

Helena Jaramillo Mesa ◽

Mauricio Alejandro Marín Montoya ◽

Pablo Gutiérrez Sánchez

Keyword(s):

Mosaic Virus ◽

Genome Sequence ◽

Complete Genome Sequence ◽

Complete Genome ◽

Plant Diseases ◽

Passion Fruit ◽

Yellow Mosaic Virus ◽

Close Relative ◽

Passiflora Edulis ◽

The World

Purple passion fruit (Passiflora edulis f. edulis), also known as gulupa, is a vine plant of the familiy Passifloraceae, which in recent years has gained importance in the world fruit market due to its exotic nature and excellent organoleptic properties. Although the demand for gulupa in Colombia has increased significantly to become one of the most important fruit exports, the cultivated area has been in decline since 2009 due to the impact of plant diseases. Cucumber mosaic virus (CMV), soybean mosaic virus (SMV) and cowpea aphid borne mosaic virus (CABMV) are amongst the main viruses found infecting gulupa in Colombia. To further characterize the virome of gulupa, a deep sequencing transcriptome study was performed from a producing region in eastern Antioquia. Based on the results of next-generation sequencing (NGS), we report the genome sequence of a tymovirus infecting this plant. Phylogenetic analysis revealed this virus to be a close relative of Passion fruit yellow mosaic virus (PFYMV), Cassia yellow mosaic-associated virus (CYMaV) and Calopogonium yellow vein virus (CYVV). To date, only a 1115 nt segment comprising the RdRP-CP region of PFYMV has been reported; this sequence shares 84.79% and 95.24% identities at the nucleotide and amino acid levels with the purple passionfruit tymovirus suggesting that the detected virus is a PFYMV isolate (PFYMV_Antioquia). Finally, RT-qPCR and Sanger sequencing using specific primers confirmed the presence of PFYMV in different purple passionfruit crops in Antioquia. This is the first complete genome sequence of a PFYMV isolate reported in the world.

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