Sequence variations in the mitochondrial DNA control region and their implications for the phylogeny of the Cypriniformes

2002 ◽  
Vol 80 (3) ◽  
pp. 569-581 ◽  
Author(s):  
Huanzhang Liu ◽  
Chyng-Shyan Tzeng ◽  
Hui-Yu Teng
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Control Region ◽  
Monophyletic Group ◽  
Mitochondrial Dna Control Region ◽  
Central Domain ◽  
Conserved Sequence ◽  
Sequence Block ◽  
Sequence Variations

The mitochondrial DNA control region of six cobitids and two catostomids was sequenced and compared with sequences of other cypriniforms to study their sequence variations. The extended termination associated sequence (ETAS) domain, central domain, and conserved sequence block (CSB) domain were partitioned and the ETAS sequence, CSB-D, CSB-E, ECSB-F, CSB1, CSB2, and CSB3 were identified. It is suggested that the "hairpin" TACAT-ATGTA is the key sequence of ETAS and GACATA is the symbol of CSB1. Phylogenetic analysis based on the CSB domain showed that all cyprinids evolved as one monophyletic group, while the non-cyprinid Cypriniformes could be another monophyly that is in accordance with the hypothesis proposed by Siebert. Further analysis of the phylogeny of the Cobitoidei was also conducted and it is tentatively suggested that their relationships are Catostomidae + (Gyrinocheilidae + (Botiinae + (Homalopteridae + (Cobitinae + Nemacheilinae)))).

scholarly journals Phylogenetic analysis of mitochondrial DNA control region in the swimming crab,portunus trituberculatus

2009 ◽  
Vol 13 (3) ◽  
pp. 305-314 ◽  
Author(s):  
Eun Min Cho ◽  
Gi‐Sik Min ◽  
Sumaira Kanwal ◽  
Young Se Hyun ◽  
Sun Wha Park ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Mitochondrial Dna ◽  
Control Region ◽  
Portunus Trituberculatus ◽  
Swimming Crab ◽  
Mitochondrial Dna Control Region

scholarly journals High Sequence Variations in Mitochondrial DNA Control Region among Worldwide Populations of Flathead MulletMugil cephalus

2014 ◽  
Vol 2014 ◽  
pp. 1-9 ◽  
Author(s):  
Brian Wade Jamandre ◽  
Jean-Dominique Durand ◽  
Wann-Nian Tzeng
Keyword(s):  
Mitochondrial Dna ◽  
Control Region ◽  
Tandem Repeats ◽  
Evolutionary Rate ◽  
Variable Number ◽  
Rapid Radiation ◽  
Mitochondrial Dna Control Region ◽  
Good Marker ◽  
Sequence Variations ◽  
Complete Mtdna

The sequence and structure of the complete mtDNA control region (CR) ofM. cephalusfrom African, Pacific, and Atlantic populations are presented in this study to assess its usefulness in phylogeographic studies of this species. The mtDNA CR sequence variations amongM. cephaluspopulations largely exceeded intraspecific polymorphisms that are generally observed in other vertebrates. The length of CR sequence varied amongM. cephaluspopulations due to the presence of indels and variable number of tandem repeats at the3′hypervariable domain. The high evolutionary rate of the CR in this species probably originated from these mutations. However, no excessive homoplasic mutations were noticed. Finally, the star shaped tree inferred from the CR polymorphism stresses a rapid radiation worldwide, in this species. The CR still appears as a good marker for phylogeographic investigations and additional worldwide samples are warranted to further investigate the genetic structure and evolution inM. cephalus.

The mitochondrial DNA control region sequences from the Chinese Miao population of southeastern China

2019 ◽  
Vol 46 (7-8) ◽  
pp. 606-609 ◽  
Author(s):  
Cuiyun Le ◽  
Zheng Ren ◽  
Hongling Zhang ◽  
Qiyan Wang ◽  
Meiqing Yang ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Control Region ◽  
Southeastern China ◽  
Mitochondrial Dna Control Region ◽  
Control Region Sequences

The mitochondrial DNA control region comparison studies of four hinged turtles and its phylogentic significance of the genusCuora sensu lato (Testudinata: Geoemydidae)

2009 ◽  
Vol 31 (5) ◽  
pp. 349-359 ◽  
Author(s):  
Yanyun Zhang ◽  
Liuwang Nie ◽  
Yuqing Huang ◽  
Youguang Pu ◽  
Li Zhang
Keyword(s):  
Mitochondrial Dna ◽  
Control Region ◽  
Mitochondrial Dna Control Region

Identification of Hake Species (MerlucciusGenus) Using Sequencing and PCR−RFLP Analysis of Mitochondrial DNA Control Region Sequences

2001 ◽  
Vol 49 (11) ◽  
pp. 5108-5114 ◽  
Author(s):  
Javier Quinteiro ◽  
Rodrigo Vidal ◽  
Mónica Izquierdo ◽  
Carmen G. Sotelo ◽  
María José Chapela ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Control Region ◽  
Rflp Analysis ◽  
Mitochondrial Dna Control Region ◽  
Control Region Sequences ◽  
Pcr Rflp

scholarly journals The mitochondrial DNA control region shows genetically correlated levels of heteroplasmy in leukocytes of centenarians and their offspring

BMC Genomics ◽  
2007 ◽  
Vol 8 (1) ◽  
pp. 293 ◽  
Author(s):  
Giuseppina Rose ◽  
Giuseppe Passarino ◽  
Vittorio Scornaienchi ◽  
Giuseppe Romeo ◽  
Serena Dato ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Control Region ◽  
Mitochondrial Dna Control Region
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