scholarly journals Investigating the Genomic Distribution of Phylogenetic Signal with CloudForest

Author(s):  
Reid Wagner ◽  
Benjamin S. Toups ◽  
Zhifeng Deng ◽  
Kyle A. Gallivan ◽  
Jeremy M. Brown ◽  
...  
2019 ◽  
Author(s):  
Marko J. Spasojevic ◽  
Sören Weber1

Stable carbon (C) and nitrogen (N) isotopes in plants are important indicators of plant water use efficiency and N acquisition strategies. While often regarded as being under environmental control, there is growing evidence that evolutionary history may also shape variation in stable isotope ratios (δ13C and δ15N) among plant species. Here we examined patterns of foliar δ13C and δ15N in alpine tundra for 59 species in 20 plant families. To assess the importance of environmental controls and evolutionary history, we examined if average δ13C and δ15N predictably differed among habitat types, if individual species exhibited intraspecific trait variation (ITV) in δ13C and δ15N, and if there were a significant phylogenetic signal in δ13C and δ15N. We found that variation among habitat types in both δ13C and δ15N mirrored well-known patterns of water and nitrogen limitation. Conversely, we also found that 40% of species exhibited no ITV in δ13C and 35% of species exhibited no ITV in δ15N, suggesting that some species are under stronger evolutionary control. However, we only found a modest signal of phylogenetic conservatism in δ13C and no phylogenetic signal in δ15N suggesting that shared ancestry is a weaker driver of tundra wide variation in stable isotopes. Together, our results suggest that both evolutionary history and local environmental conditions play a role in determining variation in δ13C and δ15N and that considering both factors can help with interpreting isotope patterns in nature and with predicting which species may be able to respond to rapidly changing environmental conditions.


Paleobiology ◽  
2021 ◽  
Vol 47 (2) ◽  
pp. 171-177
Author(s):  
James C. Lamsdell ◽  
Curtis R. Congreve

The burgeoning field of phylogenetic paleoecology (Lamsdell et al. 2017) represents a synthesis of the related but differently focused fields of macroecology (Brown 1995) and macroevolution (Stanley 1975). Through a combination of the data and methods of both disciplines, phylogenetic paleoecology leverages phylogenetic theory and quantitative paleoecology to explain the temporal and spatial variation in species diversity, distribution, and disparity. Phylogenetic paleoecology is ideally situated to elucidate many fundamental issues in evolutionary biology, including the generation of new phenotypes and occupation of previously unexploited environments; the nature of relationships among character change, ecology, and evolutionary rates; determinants of the geographic distribution of species and clades; and the underlying phylogenetic signal of ecological selectivity in extinctions and radiations. This is because phylogenetic paleoecology explicitly recognizes and incorporates the quasi-independent nature of evolutionary and ecological data as expressed in the dual biological hierarchies (Eldredge and Salthe 1984; Congreve et al. 2018; Fig. 1), incorporating both as covarying factors rather than focusing on one and treating the other as error within the dataset.


2019 ◽  
Vol 128 (1) ◽  
pp. 107-121 ◽  
Author(s):  
Katherine E Dale ◽  
M Timothy Tinker ◽  
Rita S Mehta

Abstract The geographical range of many marine species is strongly influenced by the dispersal potential of propagules such as eggs and larvae. Here, we investigate morphological diversity and the effect of body shape on geographical range of leptocephali, the unique, laterally compressed larvae of eels (order Anguilliformes). We used phylogenetically informed analyses to examine the morphological variation of larvae for 17 Eastern Pacific eel species from three adult habitats. We also investigated whether morphological traits of leptocephali could predict larval latitudinal range, hypothesizing that body shape may influence passive dispersal via currents. We found that no two species shared the same multivariate growth trajectories, with the size and scaling of pectoral fin length and snout-to-anus length being particularly variable. Larvae with longer relative predorsal and snout-to-anus lengths at median sizes exhibited wider larval geographical ranges. Body aspect ratio and maximum body length at metamorphosis, two traits we hypothesized to be important for passive transport, were not significant predictors of maximal larval range. We discovered an increase in phylogenetic signal over larval development as eels approach metamorphosis, potentially due to similar selective pressures between related species (such as juvenile habitat or adult morphology). Lastly, we conclude that larval body shape is probably influenced by adult habitat and adult morphology.


2010 ◽  
Vol 277 (1698) ◽  
pp. 3327-3333 ◽  
Author(s):  
Manabu Sakamoto

Despite the great diversity in theropod craniomandibular morphology, the presence and distribution of biting function types across Theropoda has rarely been assessed. A novel method of biomechanical profiling using mechanical advantage computed for each biting position along the entirety of the tooth row was applied to 41 extinct theropod taxa. Multivariate ordination on the polynomial coefficients of the profiles reveals the distribution of theropod biting performance in function space. In particular, coelophysoids are found to occupy a unique region of function space, while tetanurans have a wide but continuous function space distribution. Further, the underlying phylogenetic structure and evolution of biting performance were investigated using phylogenetic comparative methods. There is a strong phylogenetic signal in theropod biomechanical profiles, indicating that evolution of biting performance does not depart from Brownian motion evolution. Reconstructions of ancestral function space occupation conform to this pattern, but phylogenetically unexpected major shifts in function space occupation can be observed at the origins of some clades. However, uncertainties surround ancestor estimates in some of these internal nodes, so inferences on the nature of these evolutionary changes must be viewed with caution.


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