scholarly journals Natural Language–based Machine Learning Models for the Annotation of Clinical Radiology Reports

Radiology ◽  
2018 ◽  
Vol 287 (2) ◽  
pp. 570-580 ◽  
Author(s):  
John Zech ◽  
Margaret Pain ◽  
Joseph Titano ◽  
Marcus Badgeley ◽  
Javin Schefflein ◽  
...  
2021 ◽  
Author(s):  
Abul Hasan ◽  
Mark Levene ◽  
David Weston ◽  
Renate Fromson ◽  
Nicolas Koslover ◽  
...  

BACKGROUND The COVID-19 pandemic has created a pressing need for integrating information from disparate sources, in order to assist decision makers. Social media is important in this respect, however, to make sense of the textual information it provides and be able to automate the processing of large amounts of data, natural language processing methods are needed. Social media posts are often noisy, yet they may provide valuable insights regarding the severity and prevalence of the disease in the population. In particular, machine learning techniques for triage and diagnosis could allow for a better understanding of what social media may offer in this respect. OBJECTIVE This study aims to develop an end-to-end natural language processing pipeline for triage and diagnosis of COVID-19 from patient-authored social media posts, in order to provide researchers and other interested parties with additional information on the symptoms, severity and prevalence of the disease. METHODS The text processing pipeline first extracts COVID-19 symptoms and related concepts such as severity, duration, negations, and body parts from patients’ posts using conditional random fields. An unsupervised rule-based algorithm is then applied to establish relations between concepts in the next step of the pipeline. The extracted concepts and relations are subsequently used to construct two different vector representations of each post. These vectors are applied separately to build support vector machine learning models to triage patients into three categories and diagnose them for COVID-19. RESULTS We report that Macro- and Micro-averaged F_{1\ }scores in the range of 71-96% and 61-87%, respectively, for the triage and diagnosis of COVID-19, when the models are trained on human labelled data. Our experimental results indicate that similar performance can be achieved when the models are trained using predicted labels from concept extraction and rule-based classifiers, thus yielding end-to-end machine learning. Also, we highlight important features uncovered by our diagnostic machine learning models and compare them with the most frequent symptoms revealed in another COVID-19 dataset. In particular, we found that the most important features are not always the most frequent ones. CONCLUSIONS Our preliminary results show that it is possible to automatically triage and diagnose patients for COVID-19 from natural language narratives using a machine learning pipeline, in order to provide additional information on the severity and prevalence of the disease through the eyes of social media.


2017 ◽  
Vol 11 (04) ◽  
pp. 497-511
Author(s):  
Elnaz Davoodi ◽  
Leila Kosseim ◽  
Matthew Mongrain

This paper evaluates the effect of the context of a target word on the identification of complex words in natural language texts. The approach automatically tags words as either complex or not, based on two sets of features: base features that only pertain to the target word, and contextual features that take the context of the target word into account. We experimented with several supervised machine learning models, and trained and tested the approach with the 2016 SemEval Word Complexity Data Set. Results show that when discriminating base features are used, the words around the target word can supplement those features and improve the recognition of complex words.


Author(s):  
Marek Maziarz ◽  
Ewa Rudnicka

Expanding WordNet with Gloss and Polysemy Links for Evocation Strength RecognitionEvocation – a phenomenon of sense associations going beyond standard (lexico)-semantic relations – is difficult to recognise for natural language processing systems. Machine learning models give predictions which are only moderately correlated with the evocation strength. It is believed that ordinary graph measures are not as good at this task as methods based on vector representations. The paper proposes a new method of enriching the WordNet structure with weighted polysemy and gloss links, and proves that Dijkstra’s algorithm performs equally as well as other more sophisticated measures when set together with such expanded structures. Rozszerzenie WordNetu o glosy i relacje polisemiczne na potrzeby rozpoznawania siły ewokacjiEwokacja – zjawisko skojarzeń zmysłowych wykraczających poza standardowe (leksykalne) relacje semantyczne – jest trudne do rozpoznania dla systemów przetwarzania języka naturalnego. Modele uczenia maszynowego dają prognozy tylko umiarkowanie skorelowane z siłą ewokacji. Uważa się, że zwykłe miary grafowe nie są tak dobre w tym zadaniu, jak metody oparte na reprezentacjach wektorowych. Proponujemy nową metodę wzbogacania struktury WordNet o polisemie ważone i linki połysku i udowadniamy, że algorytm Dijkstry zestawiony z tak rozbudowanymi strukturami działa a także inne, bardziej wyrafinowane środki.


2020 ◽  
Vol 2 (1) ◽  
pp. 3-6
Author(s):  
Eric Holloway

Imagination Sampling is the usage of a person as an oracle for generating or improving machine learning models. Previous work demonstrated a general system for using Imagination Sampling for obtaining multibox models. Here, the possibility of importing such models as the starting point for further automatic enhancement is explored.


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