scholarly journals Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias

BMC Genomics ◽  
2013 ◽  
Vol 14 (1) ◽  
pp. 501 ◽  
Author(s):  
Kerensa McElroy ◽  
Osvaldo Zagordi ◽  
Rowena Bull ◽  
Fabio Luciani ◽  
Niko Beerenwinkel
Keyword(s):  
Statistical Test ◽  
Single Nucleotide Variant ◽  
Strand Bias ◽  
Single Nucleotide ◽  
Probabilistic Clustering ◽  
Variant Detection

scholarly journals Germline contamination and leakage in whole genome somatic single nucleotide variant detection

2018 ◽  
Vol 19 (1) ◽  
Author(s):  
Dorota H. Sendorek ◽  
Cristian Caloian ◽  
Kyle Ellrott ◽  
J. Christopher Bare ◽  
Takafumi N. Yamaguchi ◽  
...  
Keyword(s):  
Single Nucleotide Variant ◽  
Whole Genome ◽  
Single Nucleotide ◽  
Variant Detection

scholarly journals Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

2015 ◽  
Vol 12 (7) ◽  
pp. 623-630 ◽  
Author(s):  
Adam D Ewing ◽  
◽  
Kathleen E Houlahan ◽  
Yin Hu ◽  
Kyle Ellrott ◽  
...  
Keyword(s):  
Single Nucleotide Variant ◽  
Single Nucleotide ◽  
Variant Detection ◽  
Tumor Genome

scholarly journals Single nucleotide variant detection in Jaffrabadi buffalo (Bubalus bubalis) using high-throughput targeted sequencing

2015 ◽  
Vol 8 (2) ◽  
pp. 192-199 ◽  
Author(s):  
Maulik R. Upadhyay ◽  
Anand B. Patel ◽  
Ramalingam B. Subramanian ◽  
Tejas M. Shah ◽  
Subhash J. Jakhesara ◽  
...  
Keyword(s):  
High Throughput ◽  
Bubalus Bubalis ◽  
Single Nucleotide Variant ◽  
Targeted Sequencing ◽  
Single Nucleotide ◽  
Variant Detection

scholarly journals A Method to Evaluate the Quality of Clinical Gene-Panel Sequencing Data for Single-Nucleotide Variant Detection

2017 ◽  
Vol 19 (5) ◽  
pp. 651-658 ◽  
Author(s):  
Chung Lee ◽  
Joon S. Bae ◽  
Gyu H. Ryu ◽  
Nayoung K.D. Kim ◽  
Donghyun Park ◽  
...  
Keyword(s):  
Single Nucleotide Variant ◽  
Gene Panel ◽  
Sequencing Data ◽  
Single Nucleotide ◽  
Variant Detection ◽  
Gene Panel Sequencing ◽  
Panel Sequencing

scholarly journals A comparative study of single nucleotide variant detection performance using three massively parallel sequencing methods

PLoS ONE ◽  
2020 ◽  
Vol 15 (9) ◽  
pp. e0239850
Author(s):  
Linea Christine Trudsø ◽  
Jeppe Dyrberg Andersen ◽  
Stine Bøttcher Jacobsen ◽  
Sofie Lindgren Christiansen ◽  
Clàudia Congost-Teixidor ◽  
...  
Keyword(s):  
Comparative Study ◽  
Massively Parallel Sequencing ◽  
Detection Performance ◽  
Single Nucleotide Variant ◽  
Massively Parallel ◽  
Single Nucleotide ◽  
Parallel Sequencing ◽  
Variant Detection
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