scholarly journals Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome

2010 ◽  
Vol 5 (1) ◽  
pp. 18 ◽  
Author(s):  
Shi Wang ◽  
Lingling Zhang ◽  
Eli Meyer ◽  
Zhenmin Bao
Keyword(s):  
Transposable Elements ◽  
Tandem Repeats ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-Wide Analysis of MuDR-Related Transposable Elements Insertion Population in Maize

2011 ◽  
Vol 37 (5) ◽  
pp. 772-777
Author(s):  
Jing FENG ◽  
Xue-Qian FU ◽  
Ting-Ting WANG ◽  
Yong-Sheng TAO ◽  
You-Jun GAO ◽  
...  
Keyword(s):  
Transposable Elements ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach

BMC Genomics ◽  
2010 ◽  
Vol 11 (1) ◽  
pp. 277 ◽  
Author(s):  
Christoph Mayer ◽  
Florian Leese ◽  
Ralph Tollrian
Keyword(s):  
Tandem Repeats ◽  
Daphnia Pulex ◽  
Comparative Approach ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals TRTools: a toolkit for genome-wide analysis of tandem repeats

2020 ◽  
Author(s):  
Nima Mousavi ◽  
Jonathan Margoliash ◽  
Neha Pusarla ◽  
Shubham Saini ◽  
Richard Yanicky ◽  
...  
Keyword(s):  
Quality Control ◽  
Tandem Repeats ◽  
Supplementary Information ◽  
Command Line ◽  
Supplementary Data ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Wide Range ◽  
Downstream Analysis

Abstract Summary A rich set of tools have recently been developed for performing genome-wide genotyping of tandem repeats (TRs). However, standardized tools for downstream analysis of these results are lacking. To facilitate TR analysis applications, we present TRTools, a Python library and suite of command line tools for filtering, merging and quality control of TR genotype files. TRTools utilizes an internal harmonization module, making it compatible with outputs from a wide range of TR genotypers. Availability and implementation TRTools is freely available at https://github.com/gymreklab/TRTools. Detailed documentation is available at https://trtools.readthedocs.io. Supplementary information Supplementary data are available at Bioinformatics online.

scholarly journals Genome-wide analysis of transposable elements in the coffee berry borer Hypothenemus hampei (Coleoptera: Curculionidae): description of novel families

2017 ◽  
Vol 292 (3) ◽  
pp. 565-583 ◽  
Author(s):  
Eric M. Hernandez-Hernandez ◽  
Rita Daniela Fernández-Medina ◽  
Lucio Navarro-Escalante ◽  
Jonathan Nuñez ◽  
Pablo Benavides-Machado ◽  
...  
Keyword(s):  
Transposable Elements ◽  
Hypothenemus Hampei ◽  
Coffee Berry ◽  
Coffee Berry Borer ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals TRTools: a toolkit for genome-wide analysis of tandem repeats

2020 ◽  
Author(s):  
Nima Mousavi ◽  
Jonathan Margoliash ◽  
Neha Pusarla ◽  
Shubham Saini ◽  
Richard Yanicky ◽  
...  
Keyword(s):  
Quality Control ◽  
Tandem Repeats ◽  
Supplementary Information ◽  
Command Line ◽  
Supplementary Data ◽  
Genome Wide Analysis ◽  
Link Type ◽  
Genome Wide ◽  
Wide Range ◽  
Downstream Analysis

AbstractSummaryA rich set of tools have recently been developed for performing genome-wide genotyping of tandem repeats (TRs). However, standardized tools for downstream analysis of these results are lacking. To facilitate TR analysis applications, we present TRTools, a Python library and a suite of command-line tools for filtering, merging, and quality control of TR genotype files. TRTools utilizes an internal harmonization module making it compatible with outputs from a wide range of TR genotypers.AvailabilityTRTools is freely available at https://github.com/gymreklab/[email protected] informationSupplementary data are available at bioRxiv.

scholarly journals Genome-wide Analysis of MuDR-related Transposable Elements Inser-tion Population in Maize

2011 ◽  
Vol 37 (5) ◽  
pp. 772-777 ◽  
Author(s):  
Jing FENG ◽  
Xue-Qian FU ◽  
Ting-Ting WANG ◽  
Yong-Sheng TAO ◽  
You-Jun GAO ◽  
...  
Keyword(s):  
Transposable Elements ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide Analysis of Tandem Repeats in Plants and Green Algae

2013 ◽  
Vol 4 (1) ◽  
pp. 67-78 ◽  
Author(s):  
Zhixin Zhao ◽  
Cheng Guo ◽  
Sreeskandarajan Sutharzan ◽  
Pei Li ◽  
Craig S. Echt ◽  
...  
Keyword(s):  
Green Algae ◽  
Tandem Repeats ◽  
Genome Wide Analysis ◽  
Genome Wide
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