scholarly journals Correction to: Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment

2020 ◽  
Vol 15 (1) ◽  
Author(s):  
Antoine Bagnaro ◽  
Federico Baltar ◽  
Gretchen Brownstein ◽  
William G. Lee ◽  
Sergio E. Morales ◽  
...  
Keyword(s):  
Ecology ◽  
1979 ◽  
Vol 60 (1) ◽  
pp. 24-29 ◽  
Author(s):  
Francisco J. Ayala ◽  
James W. Valentine

2015 ◽  
Vol 45 (suppl 1) ◽  
pp. 41-61 ◽  
Author(s):  
José Alejandro Méndez Dot ◽  
José Méndez Baamonde ◽  
Dayana Reyes ◽  
Rommel Whilchy

ABSTRACTCarbonates of Cogollo Group (Apón, Lisure and Maraca formations) constitute the broader calcareous platform system originated during Aptian and Albian of Cretaceous in north-western South America, Maracaibo Basin, Venezuela. On the shallow shelf, a variety of calcareous sedimentary facies were deposited during marine transgressive and regressive cycles. Some of them developed porosity and constitute important hydrocarbon reservoirs. Due to some major marine transgressions, from early Aptian, the anoxic environment and characteristic facies of a pelagic environment moved from the outer slope and basin to the shallow shelf, during specific time intervals, favouring the sedimentation of organic matter-rich facies, which correspond to the oceanic anoxic events (OAEs) 1a and 1b. The source rock of Machiques Member (Apón Formation) was deposited during early Aptian OAE 1a (~ 120 Ma). The source rock of Piché Member, located at the top of the Apón Formation, was deposited during late Aptian OAE 1b (~ 113 Ma). Finally, La Luna Formation, from Cenomanian, that covers the OAE 2 (~ 93 Ma), represents the most important source rock in the Maracaibo Basin. In this way and based on sedimentological and organic geochemistry results from the determinations performed on 247 samples belonging to six cores in the Maracaibo Basin, we propose these two organic-rich levels, deposited on the shallow shelf of the Cogollo Group, as "effective source rocks", additional to La Luna Formation, with oil migration in relatively small distances to the porosity facies.


Author(s):  
P. S. Meadows ◽  
J. I. Campbell
Keyword(s):  

Author(s):  
Efraín Rodríguez Rubio ◽  
Alan Giraldo

Malpelo Island forms the insular ecoregion of the Colombian Pacific, and is composed by a mosaic of terrestrial ecosystems, and unique coastal and shallow subtidal systems. Considering its insular nature, the oceanographic features of this locality are expected to be related with the physical and chemical dynamics of the Eastern Tropical Pacific (ETP) and be modulated by the regional dynamic of the Colombian Pacific Oceanic Basin (COPC in Spanish). In this work, in situ data was used to describe the thermohaline conditions in the water column in Malpelo Island and identify key water mass during the two contrasting hydro-meteorological periods of the COPC. Furthermore, we analyzed the thermal and haline variability in the COPC and defined the surface geostrophic flow from in situ oceanographic data during the same time in order to evaluate its effect on the oceanographic conditions in the pelagic environment off Malpelo Island.


Author(s):  
Paul Tett

SynopsisThe lives of the plants, animals and bacteria of the plankton are ruled by the diffusive nature of their fluid medium, in which vertical turbulence is sometimes checked by density gradients caused by surface heating or inflow of freshwater. Seasonal and spatial changes in the production and species composition of phytoplankton and associated microheterotrophs result from interactions amongst light penetration, supply of mineral nutrients, and vertical mixing; many species are capable of rapid increase when multiplication exceeds losses by dispersion and predation. Water depth, currents, dispersion and food supplies control mesozooplankton.Although Scottish coastal waters include a variety of pelagic environments, there is little evidence of site-specific flora or fauna. Planktonic assemblages are, however, locally more diverse than expected. If this excess diversity is a result of ever-changing conditions, the composition of microplanktonic associations may be largely decided by chance. Explanations based on niche theory seem to apply convincingly only to the larger, semi-nektonic, pelagic crustaceans. Thus, consideration of issues relating to conservation raises fundamental and difficult questions about the biology of plankton.Conservation of species is impractical if accident plays a large part in recruitment and replacement. Conversely, the dispersive nature of the pelagic environment and the weakness of interspecific relations may lessen the sensitivity of plankton to anthropogenic perturbations. Nevertheless, eutrophication and climatic change can disturb pelagic communities, especially in enclosed waters.


Author(s):  
Peter A. Scholle ◽  
Michael A. Arthur ◽  
Allan A. Ekdale
Keyword(s):  

2020 ◽  
Vol 15 (1) ◽  
Author(s):  
Antoine Bagnaro ◽  
Federico Baltar ◽  
Gretchen Brownstein ◽  
William G. Lee ◽  
Sergio E. Morales ◽  
...  

Abstract Background One of the central objectives of microbial ecology is to study the distribution of microbial communities and their association with their environments. Biogeographical studies have partitioned the oceans into provinces and regions, but the identification of their boundaries remains challenging, hindering our ability to study transition zones (i.e. ecotones) and microbial ecosystem heterogeneity. Fuzzy clustering is a promising method to do so, as it creates overlapping sets of clusters. The outputs of these analyses thus appear both structured (into clusters) and gradual (due to the overlaps), which aligns with the inherent continuity of the pelagic environment, and solves the issue of defining ecosystem boundaries. Results We show the suitability of applying fuzzy clustering to address the patchiness of microbial ecosystems, integrating environmental (Sea Surface Temperature, Salinity) and bacterioplankton data (Operational Taxonomic Units (OTUs) based on 16S rRNA gene) collected during six cruises over 1.5 years from the subtropical frontal zone off New Zealand. The technique was able to precisely identify ecological heterogeneity, distinguishing both the patches and the transitions between them. In particular we show that the subtropical front is a distinct, albeit transient, microbial ecosystem. Each water mass harboured a specific microbial community, and the characteristics of their ecotones matched the characteristics of the environmental transitions, highlighting that environmental mixing lead to community mixing. Further explorations into the OTU community compositions revealed that, although only a small proportion of the OTUs explained community variance, their associations with given water mass were consistent through time. Conclusion We demonstrate recurrent associations between microbial communities and dynamic oceanic features. Fuzzy clusters can be applied to any ecosystem (terrestrial, human, marine, etc) to solve uncertainties regarding the position of microbial ecological boundaries and to refine the relation between the distribution of microorganisms and their environment.


Author(s):  
J. Mauchline

The pelagic environment can be divided into five gross regions. These are the intertidal and estuarine, the neritic and the oceanic epipelagic, mesopelagic and bathypelagic regions. Each of these regions has an endemic crustacean fauna but many species inhabit more than one region. The ranges and rates of fluctuations of environmental characteristics vary from the extremes encountered in the intertidal and estuarine region to the relative constancy of those in the bathypelagic region.


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