High-Dimensional ODEs Coupled With Mixed-Effects Modeling Techniques for Dynamic Gene Regulatory Network Identification

Journal of the American Statistical Association ◽

10.1198/jasa.2011.ap10194 ◽

2011 ◽

Vol 106 (496) ◽

pp. 1242-1258 ◽

Author(s):

Tao Lu ◽

Hua Liang ◽

Hongzhe Li ◽

Hulin Wu

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Mixed Effects ◽

High Dimensional ◽

Mixed Effects Modeling ◽

Modeling Techniques ◽

Network Identification ◽

Gene Regulatory

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Investigate Data Dependency for Dynamic Gene Regulatory Network Identification through High-dimensional Differential Equation Approach

Communications in Statistics - Simulation and Computation ◽

10.1080/03610918.2014.902224 ◽

2014 ◽

Vol 45 (7) ◽

pp. 2377-2391 ◽

Author(s):

Tao Lu ◽

Min Wang

Keyword(s):

Differential Equation ◽

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Data Dependency ◽

Equation Approach ◽

Network Identification ◽

Gene Regulatory

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Design of experiment for nonlinear dynamic gene regulatory network identification

Journal of Biopharmaceutical Statistics ◽

10.1080/10543406.2017.1315818 ◽

2017 ◽

Vol 28 (3) ◽

pp. 402-412

Author(s):

Tao Lu

Keyword(s):

Gene Regulatory Network ◽

Design Of Experiment ◽

Nonlinear Dynamic ◽

Regulatory Network ◽

Network Identification ◽

Gene Regulatory

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Gene Regulatory Network Identification with Qualitative Probabilistic Networks

Biological Knowledge Discovery Handbook ◽

10.1002/9781118617151.ch12 ◽

2013 ◽

pp. 281-306

Author(s):

Zina M. Ibrahim ◽

Alioune Ngom ◽

Ahmed Y. Tawfik

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Probabilistic Networks ◽

Network Identification ◽

Gene Regulatory

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A new method for perturbation experimental design in gene regulatory network identification

Proceedings of the 10th World Congress on Intelligent Control and Automation ◽

10.1109/wcica.2012.6359442 ◽

2012 ◽

Author(s):

Xin Wang

Keyword(s):

Experimental Design ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Network Identification ◽

Gene Regulatory

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Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network

Physical Review Letters ◽

10.1103/physrevlett.94.128701 ◽

2005 ◽

Vol 94 (12) ◽

Author(s):

Sui Huang ◽

Gabriel Eichler ◽

Yaneer Bar-Yam ◽

Donald E. Ingber

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Gene Regulatory

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Sparse Gene Regulatory Network Identification

Knowledge Discovery and Emergent Complexity in Bioinformatics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-71037-0_12 ◽

2008 ◽

pp. 171-182 ◽

Author(s):

Ralf L. M. Peeters ◽

Stef Zeemering

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Network Identification ◽

Gene Regulatory

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Faculty Opinions recommendation of Cell fates as high-dimensional attractor states of a complex gene regulatory network.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1031440.564022 ◽

2008 ◽

Author(s):

Alfonso Martinez Arias

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Gene Regulatory

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Identifying the dynamic gene regulatory network during latent HIV-1 reactivation using high-dimensional ordinary differential equations

International Journal of Computational Biology and Drug Design ◽

10.1504/ijcbdd.2018.090844 ◽

2018 ◽

Vol 11 (1/2) ◽

pp. 135

Author(s):

Jaejoon Song ◽

Michelle Carey ◽

Hongjian Zhu ◽

Hongyu Miao ◽

Juan Camilo Ramírez ◽

...

Keyword(s):

Differential Equations ◽

Ordinary Differential Equations ◽

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Gene Regulatory ◽

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Faculty Opinions recommendation of Cell fates as high-dimensional attractor states of a complex gene regulatory network.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1031440.365657 ◽

2006 ◽

Author(s):

Elena Alvarez-Buylla

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Gene Regulatory

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Gene Regulatory Network Identification based on Forest Graph-embedded Deep Feedforward Network

10.1145/3493287.3493297 ◽

2021 ◽

Author(s):

Bin Yang

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Feedforward Network ◽

Network Identification ◽

Gene Regulatory

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