Identifying the dynamic gene regulatory network during latent HIV-1 reactivation using high-dimensional ordinary differential equations

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Gene Regulatory ◽

Latent Hiv ◽

Hiv 1

Identifying the dynamic gene regulatory network during latent HIV-1 reactivation using high-dimensional ordinary differential equations

International Journal of Computational Biology and Drug Design ◽

10.1504/ijcbdd.2018.10011910 ◽

2018 ◽

Vol 11 (1/2) ◽

pp. 135

Author(s):

Hulin Wu ◽

Jaejoon Song ◽

Michelle Carey ◽

Hongjian Zhu ◽

Hongyu Miao ◽

...

Keyword(s):

Differential Equations ◽

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Gene Regulatory ◽

Latent Hiv ◽

Hiv 1

Sparse Additive Ordinary Differential Equations for Dynamic Gene Regulatory Network Modeling

Journal of the American Statistical Association ◽

10.1080/01621459.2013.859617 ◽

2014 ◽

Vol 109 (506) ◽

pp. 700-716 ◽

Cited By ~ 39

Author(s):

Hulin Wu ◽

Tao Lu ◽

Hongqi Xue ◽

Hua Liang

Keyword(s):

Differential Equations ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Network Modeling ◽

Single Cell Universal Differential Equations: A Machine Learning Framework for Extracting Ordinary Differential Equations for Gene Regulatory Network Inference

The FASEB Journal ◽

10.1096/fasebj.2021.35.s1.03839 ◽

2021 ◽

Vol 35 (S1) ◽

Author(s):

Omar Kana ◽

Sudin Bhattacharya

Keyword(s):

Machine Learning ◽

Differential Equations ◽

Single Cell ◽

Gene Regulatory Network ◽

Regulatory Network ◽

Network Inference ◽

Gene Regulatory Network Inference ◽

Learning Framework ◽

Investigate Data Dependency for Dynamic Gene Regulatory Network Identification through High-dimensional Differential Equation Approach

Communications in Statistics - Simulation and Computation ◽

10.1080/03610918.2014.902224 ◽

2014 ◽

Vol 45 (7) ◽

pp. 2377-2391 ◽

Cited By ~ 1

Author(s):

Tao Lu ◽

Min Wang

Keyword(s):

Differential Equation ◽

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Data Dependency ◽

Equation Approach ◽

Network Identification ◽

High-Dimensional ODEs Coupled With Mixed-Effects Modeling Techniques for Dynamic Gene Regulatory Network Identification

Journal of the American Statistical Association ◽

10.1198/jasa.2011.ap10194 ◽

2011 ◽

Vol 106 (496) ◽

pp. 1242-1258 ◽

Cited By ~ 36

Author(s):

Tao Lu ◽

Hua Liang ◽

Hongzhe Li ◽

Hulin Wu

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Mixed Effects ◽

High Dimensional ◽

Mixed Effects Modeling ◽

Modeling Techniques ◽

Network Identification ◽

A hub gene in an HIV-1 gene regulatory network is a promising target for anti-HIV-1 drugs

Artificial Life and Robotics ◽

10.1007/s10015-009-0735-5 ◽

2009 ◽

Vol 14 (4) ◽

pp. 528-531 ◽

Cited By ~ 2

Author(s):

Kouji Harada ◽

Yoshiteru Ishida

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Hub Gene ◽

Promising Target ◽

Gene Regulatory ◽

Anti Hiv ◽

Hiv 1

Cell Fates as High-Dimensional Attractor States of a Complex Gene Regulatory Network

Physical Review Letters ◽

10.1103/physrevlett.94.128701 ◽

2005 ◽

Vol 94 (12) ◽

Cited By ~ 415

Author(s):

Sui Huang ◽

Gabriel Eichler ◽

Yaneer Bar-Yam ◽

Donald E. Ingber

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Cell Fates ◽

Faculty Opinions recommendation of Cell fates as high-dimensional attractor states of a complex gene regulatory network.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1031440.564022 ◽

2008 ◽

Author(s):

Alfonso Martinez Arias

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

High Dimensional ◽

Cell Fates ◽

Modeling Genome-Wide Dynamic Regulatory Network in Mouse Lungs with Influenza Infection Using High-Dimensional Ordinary Differential Equations

PLoS ONE ◽

10.1371/journal.pone.0095276 ◽

2014 ◽

Vol 9 (5) ◽

pp. e95276 ◽

Cited By ~ 7

Author(s):

Shuang Wu ◽

Zhi-Ping Liu ◽

Xing Qiu ◽

Hulin Wu

Keyword(s):

Differential Equations ◽

Regulatory Network ◽

Influenza Infection ◽

High Dimensional ◽

Genome Wide ◽

Mouse Lungs

Dynamics of the Gene Regulatory Network of HIV-1 and the Role of Viral Non-coding RNAs on Latency Reversion

Frontiers in Physiology ◽

10.3389/fphys.2018.01364 ◽

2018 ◽

Vol 9 ◽

Cited By ~ 2

Author(s):

Antonio Bensussen ◽

Christian Torres-Sosa ◽

Ramón A. Gonzalez ◽

José Díaz

Keyword(s):

Gene Regulatory Network ◽

Regulatory Network ◽

Gene Regulatory ◽

Non Coding Rnas ◽

Hiv 1